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Do not run Conda test GHA on MacOS ARM64
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Do not run the Conda environment test on MacOS ARM64, as the `subread`
package is not available there.
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fasterius committed Oct 23, 2024
1 parent 005d364 commit 7868755
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2 changes: 2 additions & 0 deletions .github/workflows/setup.yml
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Expand Up @@ -20,8 +20,10 @@ jobs:
env: [snakemake, nextflow, jupyter, quarto]
include:
- env: snakemake
os: ubuntu-latest # Conda on MacOS ARM64 doesn't have subread
cmd: snakemake -c 1 -d tutorials/snakemake/ -s tutorials/snakemake/snakefile_mrsa.smk
- env: nextflow
os: ubuntu-latest # Conda on MacOS ARM64 doesn't have subread
cmd: cd tutorials/nextflow && nextflow run main_mrsa.nf
- env: jupyter
cmd: jupyter nbconvert --to HTML tutorials/jupyter/supplementary_material.ipynb
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