Update GHA versions; minor formatting of GHA

.github/workflows/canvas-upload.yml

@@ -1,27 +1,30 @@
-name: canvas-upload
+name: Canvas upload
 
 on:
   workflow_dispatch:
     branches:
       - main
       - devel
   push:
-    paths:
-      - 'pages/tools-for-reproducible-research.md'
-      - 'pages/upload-page-to-canvas.sh'
     branches:
       - main
       - devel
+    paths:
+      - 'pages/tools-for-reproducible-research.md'
+      - 'pages/upload-page-to-canvas.sh'
+
 jobs:
   upload:
     runs-on: ubuntu-latest
     container: pandoc/latex
     steps:
-    - uses: actions/checkout@v2
-      with:
-        fetch-depth: 0
-    - name: Upload pages
-      env:
-        API_TOKEN: ${{ secrets.CANVAS_API_TOKEN }}
-      run: |
-        bash pages/upload-page-to-canvas.sh pages/tools-for-reproducible-research.md $API_TOKEN
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Upload landing page to Canvas
+        env:
+          API_TOKEN: ${{ secrets.CANVAS_API_TOKEN }}
+        run: |
+          bash pages/upload-page-to-canvas.sh pages/tools-for-reproducible-research.md $API_TOKEN

.github/workflows/docker-run.yml

@@ -19,8 +19,10 @@ jobs:
   docker-build-and-run:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
+      - name: Checkout
+        uses: actions/checkout@v4
+
       - name: Docker build
         run: |
           docker build -t my_docker_project -f tutorials/containers/Dockerfile tutorials/containers/
-          docker run --rm my_docker_project
+          docker run --rm my_docker_project

.github/workflows/setup.yml

@@ -8,13 +8,14 @@ on:
   pull_request:
     branches:
       - main
+      - devel
 
 jobs:
   install:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        os: [ macos-latest, ubuntu-latest ]
+        os: [macos-latest, ubuntu-latest]
         env: [snakemake, nextflow, jupyter, quarto]
         include:
           - env: snakemake
@@ -26,16 +27,18 @@ jobs:
           - env: quarto
             cmd: mamba install -c conda-forge quarto && mamba install -c conda-forge deno && export QUARTO_DENO=$(which deno) && quarto render tutorials/quarto/quarto-tutorial-example.qmd --to html
     steps:
-      - uses: actions/checkout@v2
-      - uses: conda-incubator/[email protected]
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Conda setup
+        uses: conda-incubator/setup-miniconda@v3
         with:
-          miniforge-variant: Mambaforge
           miniforge-version: latest
           activate-environment: ${{ matrix.env }}-env
           environment-file: tutorials/${{ matrix.env }}/environment.yml
-          use-mamba: true
           channel-priority: strict
-      - name: Test ${{ matrix.env }}
+
+      - name: Test ${{ matrix.env }} Conda environment
         shell: bash -l {0}
         run: |
           conda list