Merge pull request #32 from NBISweden/devel

Lectures day 2 and 3
NBISweden · Sep 8, 2022 · ffc7374 · ffc7374
2 parents c57ff37 + 832f3a6
commit ffc7374
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diff --git a/lectures/bestpractices-detail/bestpractices-detail.Rmd b/lectures/bestpractices-detail/bestpractices-detail.Rmd
diff --git a/lectures/bestpractices-detail/bestpractices-detail.qmd b/lectures/bestpractices-detail/bestpractices-detail.qmd
diff --git a/lectures/custom.scss b/lectures/custom.scss
@@ -0,0 +1,55 @@
+/* SCSS custom modifications for NBIS presentations using quarto, revealjs and rmarkdown */
+
+/*-- scss:defaults --*/
+
+/*-- scss:rules --*/
+
+.scroll-1000 {
+    max-height: 1000px;
+    overflow-y: auto;
+    background-color: inherit;
+}
+.scroll-400  {
+    max-height: 400px;
+    overflow-y: auto;
+    background-color: inherit;
+}
+.scroll-300  {
+    max-height: 300px;
+    overflow-y: auto;
+    background-color: inherit;
+}
+.scroll-200  {
+    max-height: 200px;
+    overflow-y: auto;
+    background-color: inherit;
+}
+
+pre.out {
+  background-color: lightgreen;
+}
+pre.sourceCode.src {
+  background-color: lightblue;
+}
+
+.green { color: #85be42; font-weight: bold }
+
+code.tree {
+    line-height: 8px;
+    font-size: 18px;
+}
+
+code.stree {
+    line-height: 6.6px;
+    font-size: 12px;
+}
+
+code.sstree {
+    line-height: 5.6px;
+    font-size: 10px;
+}
+
+
+code.large {
+    font-size: 20px;
+}
diff --git a/lectures/reproducibility-tools/Makefile b/lectures/reproducibility-tools/Makefile
@@ -0,0 +1,8 @@
+all: reproducibility-tools.html
+
+%.html: %.Rmd
+	Rscript -e 'rmarkdown::render("$<")'
+
+# OPENSSL_CONF due to https://github.com/nodejs/node/issues/43132#issuecomment-1130503287
+%.pdf: %.html
+	OPENSSL_CONF=/dev/null Rscript -e 'library(webshot); webshot("$<", "$@")'