Add AliceVision

pkgs/development/libraries/alice-vision/cmake-disable-optimize-for-architecture.patch

@@ -0,0 +1,12 @@
+diff --git a/nix/store/ipz4izl82p822flysklls9bnm686ay14-source/src/CMakeLists.txt b/pkgs/applications/graphics/alice-vision/CMakeLists.txt
+index 118281d65cb..85b15586452 100644
+--- a/src/CMakeLists.txt
++++ b/src/CMakeLists.txt
+@@ -178,7 +178,6 @@ endif()
+ set(CMAKE_MODULE_PATH
+   ${CMAKE_MODULE_PATH} ${CMAKE_CURRENT_SOURCE_DIR}/cmake)
+ include(OptimizeForArchitecture)
+-OptimizeForArchitecture()
+ set(ALICEVISION_HAVE_SSE 0)
+ if(SSE2_FOUND OR TARGET_ARCHITECTURE STREQUAL "native")
+   if(MSVC AND NOT ${CMAKE_CL_64})

pkgs/development/libraries/alice-vision/default.nix

@@ -0,0 +1,208 @@
+{ lib
+, stdenv
+, fetchFromGitHub
+, cmake
+, pkg-config
+
+, assimp
+, boost
+, ceres-solver
+, clp
+, eigen
+, expat
+, flann
+, geogram
+, lemon-graph
+, lz4
+, nanoflann
+, openexr
+, openimageio
+, zlib
+
+, enableOpenMP ? true
+# Separate openmp input only required on Darwin stdenv (LLVM)
+, openmp
+
+, enableAlembic ? true, alembic
+, enableCctag ? true, cctag
+, enableOpenCV ? true, enableOpenCVContrib ? enableOpenCV, opencv
+}:
+
+stdenv.mkDerivation rec {
+  pname = "alice-vision";
+  version = "3.0.0";
+
+  outputs = [ "out" "dev" ];
+
+  src = fetchFromGitHub {
+    owner = "alicevision";
+    repo = "AliceVision";
+    rev = "v${version}";
+    hash = "sha256-rFd2AFtvC1RugKGv4tI2k3rtDqXHjdDC3pgOrqDqIT0=";
+  };
+
+  nativeBuildInputs = [
+    cmake
+    pkg-config
+  ];
+
+  buildInputs = [
+    flann
+    nanoflann
+    openexr
+
+    # Temporary fix until flann 1.9.2 is in Nixpkgs
+    lz4
+  ];
+
+  propagatedBuildInputs = [
+    assimp
+    boost
+    ceres-solver
+    clp
+    eigen
+    expat
+    geogram
+    lemon-graph
+    openimageio
+    zlib
+  ] ++ lib.optional enableAlembic alembic
+    ++ lib.optional enableCctag cctag
+    ++ lib.optional enableOpenCV opencv
+    ++ lib.optional stdenv.cc.isClang openmp;
+
+  patches = [
+    # Don't optimize for the host processor (could lead to reproducibility issues)
+    ./cmake-disable-optimize-for-architecture.patch
+
+    # Upstream uses patched Clp/Osi/CoinUtils containing CMake build scripts.
+    # Instead of the patched versions, we re-use our packages and add CMake
+    # find modules that use the pkg-config files already generated by those
+    # dependencies.
+    ./find-coin-modules.patch
+
+    ./find-flann.patch
+  ];
+
+  # Instead of using dependencies from Git submodules, we use Nix packages
+  # This speeds up fetching and reduces the source archive size
+  postPatch = ''
+    rmdir src/dependencies/nanoflann
+    ln -s ${nanoflann} src/dependencies/nanoflann
+
+    rm -r src/dependencies/lemon
+    rm -r src/dependencies/flann
+
+    rm src/cmake/FindFlann.cmake
+
+    substituteInPlace src/CMakeLists.txt \
+      --replace 'if(NOT EXISTS ''${CMAKE_CURRENT_SOURCE_DIR}/dependencies/flann/src)' 'if(FALSE)'
+
+    substituteInPlace src/aliceVision/matching/CMakeLists.txt \
+      --replace ' ''${FLANN_LIBRARY}' ' flann::flann_cpp' \
+      --replace \
+        'alicevision_add_test(matching_test.cpp NAME "matching"          LINKS aliceVision_matching)' \
+        'alicevision_add_test(matching_test.cpp NAME "matching"          LINKS aliceVision_matching lz4)'
+  '';
+
+  # Disable warning causing compile error on certain Clang versions
+  CXXFLAGS = lib.optionalString stdenv.cc.isClang "-Wno-c++11-narrowing";
+
+  cmakeFlags =
+    let
+      cmakeOption = name: enabled: "-D${name}:BOOL=" + (if enabled then "ON" else "OFF");
+    in
+      lib.mapAttrsToList (name: cmakeOption "ALICEVISION_USE_${lib.toUpper (lib.removePrefix "enable" name)}") {
+        inherit enableAlembic enableCctag enableOpenCV enableOpenMP;
+
+        enableApriltag = false;
+        enableMeshSDFilter = false;
+        enableOpenGV = false;
+
+        enableCuda = false;
+        enablePopsift = false;
+        enableUncertaintyTE = false;
+
+        enableOpenCV_Contrib = enableOpenCVContrib;
+
+        # Could be enabled, but does not compile as of v2.4.0 (upstream bug)
+        enableOcvsift = false;
+      } ++ lib.mapAttrsToList cmakeOption {
+        ALICEVISION_BUILD_DEPENDENCIES = false;
+
+        # Disable most binaries - most of them don't build due to compile errors
+        ALICEVISION_BUILD_DOC = false;
+        ALICEVISION_BUILD_EXAMPLES = false;
+        ALICEVISION_BUILD_SOFTWARE = false;
+
+        ALICEVISION_BUILD_TESTS = doCheck;
+
+        ALICEVISION_REQUIRE_CERES_WITH_SUITESPARSE = true;
+      } ++ [
+        # Note: Don't explicitly set ALICEVISION_USE_INTERNAL_FLANN or ALICEVISION_USE_INTERNAL_LEMON
+        # to OFF, as that will cause the opposite effect since the CMake script only checks whether these
+        # variables are defined (instead of picking up their value).
+
+        "-DFLANN_INCLUDE_DIR_HINTS:PATH=${flann}"
+        "-DLEMON_INCLUDE_DIR_HINTS:PATH=${lemon-graph}"
+      ];
+
+  # Remove third-party dependency headers
+  postInstall = ''
+    mv $out/share $dev
+    mv $out/include/aliceVision/* $dev/include/aliceVision
+    mv $out/include/aliceVision_dependencies $dev/include
+    rmdir $out/include/aliceVision
+    rmdir $out/include
+  '';
+
+  doCheck = true;
+
+  checkPhase =
+    let
+      disabledTests = [
+        # sfm_panorama tests hang
+        "^test_aliceVision_test_sfm_panorama_(radial3|equidistant)(_outliers)?$"
+
+        # Broken due to lz4 linking issue
+        "^test_aliceVision_test_matching$"
+
+        # Tests that can take a long time (>30 seconds) to run
+        "^test_aliceVision_test_hdr_(debevec|laguerre|grossberg)$"
+
+        "^test_aliceVision_test_voctree_kmeans$"
+      ] ++ lib.optionals stdenv.isDarwin [
+        # Regular timeouts
+        "^test_aliceVision_test_colorHarmonization_gainOffsetConstraintBuilder$"
+        "^test_aliceVision_test_image$"
+        "^test_aliceVision_test_features$"
+
+        # Fails on Darwin
+        "^test_aliceVision_test_voctree_vocabularyTree$"
+      ];
+      excludeRegex = lib.concatStringsSep "|" disabledTests;
+      exclude = "--exclude-regex ${lib.escapeShellArg excludeRegex}";
+    in
+    ''
+      runHook preCheck
+
+      ${lib.optionalString stdenv.isDarwin ''
+        export DYLD_LIBRARY_PATH="${lib.getLib geogram}/lib:$(pwd)"
+      ''}
+
+      ctest \
+          --force-new-ctest-process \
+          --timeout 120 \
+          ${exclude}
+
+      runHook postCheck
+    '';
+
+  meta = with lib; {
+    description = "Photogrammetric Computer Vision Framework which provides a 3D Reconstruction and Camera Tracking algorithms";
+    homepage = "https://alicevision.org";
+    downloadPage = "https://github.com/alicevision/AliceVision";
+    license = with licenses; [ mpl20 mit bsd2 ];
+    maintainers = with maintainers; [ tmarkus ];
+  };
+}

pkgs/development/libraries/alice-vision/find-coin-modules.patch

@@ -0,0 +1,123 @@
+--- a/src/CMakeLists.txt	1970-01-01 01:00:01.000000000 +0100
++++ b/src/CMakeLists.txt	2023-04-03 16:32:16.994922955 +0200
+@@ -1,5 +1,7 @@
+ cmake_minimum_required(VERSION 3.11)
+
++list(PREPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_SOURCE_DIR}/../modules)
++
+ # ==============================================================================
+ # AliceVision version
+ # ==============================================================================
+@@ -433,6 +435,7 @@
+   find_package(CoinUtils REQUIRED)
+   find_package(Clp REQUIRED)
+   find_package(Osi REQUIRED)
++  find_package(OsiClp REQUIRED)
+ endif()
+
+ # ==============================================================================
+--- a/src/aliceVision/linearProgramming/CMakeLists.txt	1970-01-01 01:00:01.000000000 +0100
++++ b/src/aliceVision/linearProgramming/CMakeLists.txt	2023-04-03 16:33:09.883053876 +0200
+@@ -13,6 +13,7 @@
+   Coin::Clp        # clp + solver wrapper
+   Coin::CoinUtils  # container tools
+   Coin::Osi        # generic LP
++  Coin::OsiClp
+ )
+
+ if (NOT MOSEK_FOUND)
+--- /dev/null	2023-03-27 18:27:39.858686170 +0200
++++ b/modules/FindCoinUtils.cmake	2023-04-03 16:12:16.146494958 +0200
+@@ -0,0 +1,21 @@
++find_package(PkgConfig REQUIRED)
++if(PKG_CONFIG_FOUND)
++  pkg_check_modules(PC_COINUTILS REQUIRED IMPORTED_TARGET coinutils)
++
++  add_library(Coin::CoinUtils ALIAS PkgConfig::PC_COINUTILS)
++endif()
++
++find_path(COINUTILS_INCLUDE_DIRS
++          NAMES CoinUtilsConfig.h
++          HINTS ${PC_COINUTILS_INCLUDE_DIRS})
++
++if (EXISTS "${COINUTILS_INCLUDE_DIRS}/CoinUtilsConfig.h")
++  file(STRINGS "${COINUTILS_INCLUDE_DIRS}/CoinUtilsConfig.h" coinutils_version_str REGEX "^#define[\t ]+COINUTILS_VERSION[\t ]+\".*\"")
++  string(REGEX REPLACE "^#define[\t ]+COINUTILS_VERSION[\t ]+\"([^\"]*)\".*" "\\1" CoinUtils_VERSION "${coinutils_version_str}")
++endif()
++
++include(FindPackageHandleStandardArgs)
++find_package_handle_standard_args(CoinUtils
++  REQUIRED_VARS COINUTILS_INCLUDE_DIRS
++  VERSION_VAR CoinUtils_VERSION
++	)
+--- /dev/null	2023-03-27 18:27:39.858686170 +0200
++++ b/modules/FindClp.cmake	2023-04-03 16:12:16.146494958 +0200
+@@ -0,0 +1,21 @@
++find_package(PkgConfig REQUIRED)
++if(PKG_CONFIG_FOUND)
++  pkg_check_modules(PC_CLP REQUIRED IMPORTED_TARGET clp)
++
++  add_library(Coin::Clp ALIAS PkgConfig::PC_CLP)
++endif()
++
++find_path(CLP_INCLUDE_DIRS
++          NAMES ClpConfig.h
++          HINTS ${PC_CLP_INCLUDE_DIRS})
++
++if (EXISTS "${CLP_INCLUDE_DIRS}/ClpConfig.h")
++  file(STRINGS "${CLP_INCLUDE_DIRS}/ClpConfig.h" clp_version_str REGEX "^#define[\t ]+CLP_VERSION[\t ]+\".*\"")
++  string(REGEX REPLACE "^#define[\t ]+CLP_VERSION[\t ]+\"([^\"]*)\".*" "\\1" Clp_VERSION "${clp_version_str}")
++endif()
++
++include(FindPackageHandleStandardArgs)
++find_package_handle_standard_args(Clp
++  REQUIRED_VARS CLP_INCLUDE_DIRS
++  VERSION_VAR Clp_VERSION
++	)
+--- /dev/null	2023-03-27 18:27:39.858686170 +0200
++++ b/modules/FindOsi.cmake	2023-04-03 16:12:16.147494961 +0200
+@@ -0,0 +1,22 @@
++find_package(PkgConfig REQUIRED)
++if(PKG_CONFIG_FOUND)
++  pkg_check_modules(PC_OSI REQUIRED IMPORTED_TARGET osi)
++
++  add_library(Coin::Osi ALIAS PkgConfig::PC_OSI)
++endif()
++
++find_path(OSI_INCLUDE_DIRS
++          NAMES OsiConfig.h
++          HINTS ${PC_OSI_INCLUDE_DIRS})
++
++if (EXISTS "${OSI_INCLUDE_DIRS}/OsiConfig.h")
++  file(STRINGS "${OSI_INCLUDE_DIRS}/OsiConfig.h" osi_version_str REGEX "^#define[\t ]+OSI_VERSION[\t ]+\".*\"")
++  string(REGEX REPLACE "^#define[\t ]+OSI_VERSION[\t ]+\"([^\"]*)\".*" "\\1" Osi_VERSION "${osi_version_str}")
++endif()
++
++
++include(FindPackageHandleStandardArgs)
++find_package_handle_standard_args(Osi
++  REQUIRED_VARS OSI_INCLUDE_DIRS
++  VERSION_VAR Osi_VERSION
++	)
+--- /dev/null	2023-03-27 18:27:39.858686170 +0200
++++ b/modules/FindOsiClp.cmake	2023-04-03 16:31:08.255752799 +0200
+@@ -0,0 +1,18 @@
++find_package(PkgConfig REQUIRED)
++if(PKG_CONFIG_FOUND)
++  pkg_check_modules(PC_OSI_CLP REQUIRED IMPORTED_TARGET osi-clp)
++
++  add_library(Coin::OsiClp ALIAS PkgConfig::PC_OSI_CLP)
++
++  set(OsiClp_VERSION ${PC_OSI_CLP_VERSION})
++endif()
++
++find_path(OSI_CLP_INCLUDE_DIRS
++          NAMES OsiSolverInterface.hpp
++          HINTS ${PC_OSI_CLP_INCLUDE_DIRS})
++
++include(FindPackageHandleStandardArgs)
++find_package_handle_standard_args(OsiClp
++  REQUIRED_VARS OSI_CLP_INCLUDE_DIRS
++  VERSION_VAR OsiClp_VERSION
++	)
+

pkgs/development/libraries/alice-vision/find-flann.patch

@@ -0,0 +1,23 @@
+--- /dev/null	2023-04-03 16:53:39.918168848 +0200
++++ b/modules/FindFlann.cmake	2023-04-03 21:33:25.433754406 +0200
+@@ -0,0 +1,20 @@
++find_package(PkgConfig REQUIRED)
++if(PKG_CONFIG_FOUND)
++  pkg_check_modules(PC_FLANN REQUIRED IMPORTED_TARGET flann)
++  pkg_check_modules(PC_LZ4 REQUIRED IMPORTED_TARGET liblz4)
++
++  add_library(flann::flann_cpp ALIAS PkgConfig::PC_FLANN)
++  set(FLANN_LIBRARY flann::flann_cpp)
++
++  set(FLANN_VERSION ${PC_FLANN_VERSION})
++endif()
++
++find_path(FLANN_INCLUDE_DIRS
++          NAMES flann/flann.hpp
++          HINTS ${PC_FLANN_INCLUDE_DIRS})
++
++include(FindPackageHandleStandardArgs)
++find_package_handle_standard_args(Flann
++  REQUIRED_VARS FLANN_INCLUDE_DIRS
++  VERSION_VAR FLANN_VERSION
++  )

pkgs/development/libraries/geogram/default.nix

@@ -93,6 +93,9 @@ stdenv.mkDerivation rec {
 
         # Skip slow RVD test
         "RVD"
+
+        # Occasional segfault
+        "Delaunay"
       ];
     in
     ''