reorg: modular file reorganization of C source code - v9

[jasonish]

Continuation of #9960.

This is the same is #9960, but fixes the util migration as a file went missing. Also conforms to CI's idea of clang-format.

Some tests still fail:

• The template tests, fixing the template generation will need to be done manually, so will wait til we're 100% on the layout
• Example plugin with standalone makefile as devel headers aren't installed correctly. This will probably have to be a manual update to the Makefile(s)
• Somethings else are bound to fail.

Next steps:

• app-layer/
• output/eve
• output/
• util/
• util/mpm/
• sources/ (or capture?)
• detect/

[jasonish]

Compressions like this by clang-format are what caused the drop in line count.

[suricata-qa]

ERROR:

ERROR: QA failed on build_dbg.

Pipeline 16881

[ct0br0]

looks like git already picked it up below but

HEAD is now at c1bf95532 detect-engine: use ports only after edge case handling
Rebasing (1/36)
Rebasing (2/36)
Rebasing (3/36)
Rebasing (4/36)
Auto-merging src/detect-asn1.c
CONFLICT (content): Merge conflict in src/detect-asn1.c
Auto-merging src/detect-asn1.h
Auto-merging src/detect-engine-build.c
CONFLICT (content): Merge conflict in src/detect-engine-build.c
Auto-merging src/detect-engine-content-inspection.c
Auto-merging src/detect-engine-port.c
Auto-merging src/detect-engine-siggroup.c
Auto-merging src/detect.h
CONFLICT (content): Merge conflict in src/detect.h
error: could not apply 4ddd586ad... reorg: clang-format src/*
hint: Resolve all conflicts manually, mark them as resolved with
hint: "git add/rm <conflicted_files>", then run "git rebase --continue".
hint: You can instead skip this commit: run "git rebase --skip".
hint: To abort and get back to the state before "git rebase", run "git rebase --abort".

[jasonish]

looks like git already picked it up below but

HEAD is now at c1bf95532 detect-engine: use ports only after edge case handling
Rebasing (1/36)
Rebasing (2/36)
Rebasing (3/36)
Rebasing (4/36)
Auto-merging src/detect-asn1.c
CONFLICT (content): Merge conflict in src/detect-asn1.c
Auto-merging src/detect-asn1.h
Auto-merging src/detect-engine-build.c
CONFLICT (content): Merge conflict in src/detect-engine-build.c
Auto-merging src/detect-engine-content-inspection.c
Auto-merging src/detect-engine-port.c
Auto-merging src/detect-engine-siggroup.c
Auto-merging src/detect.h
CONFLICT (content): Merge conflict in src/detect.h
error: could not apply 4ddd586ad... reorg: clang-format src/*
hint: Resolve all conflicts manually, mark them as resolved with
hint: "git add/rm <conflicted_files>", then run "git rebase --continue".
hint: You can instead skip this commit: run "git rebase --skip".
hint: To abort and get back to the state before "git rebase", run "git rebase --abort".

Yes, this work is non-rebaseable.

[suricata-qa]

Information: QA ran without warnings.

Pipeline 16888