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@PHWGS

Public Health WGS in Europe

Initiative to share code and knowledge between PH institutes in Europe (and beyond) regarding whole genome sequencing.

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  1. ssi-listeria-molsero ssi-listeria-molsero Public

    molecular serotyping script for Listeria monocytogenes by Kristoffer Kiil

    Python 1

  2. phe_gastro_references phe_gastro_references Public

    The references that are used by PHE Gastrofor whole genome SNP calling

    1

  3. ssi-snp-pipeline ssi-snp-pipeline Public

    bwa/elprep/gatk snp pipline by Kristoffer Kiil

    Python

  4. PH-WGS-Meeting PH-WGS-Meeting Public

    Info from PH WGS meetings

  5. Ecoli_evaluation_set Ecoli_evaluation_set Public

    Ecoli sequence for pipeline evaluation

    1

Repositories

Showing 5 of 5 repositories
  • phe_gastro_references Public

    The references that are used by PHE Gastrofor whole genome SNP calling

    PHWGS/phe_gastro_references’s past year of commit activity
    1 GPL-2.0 0 0 0 Updated May 26, 2015
  • Ecoli_evaluation_set Public

    Ecoli sequence for pipeline evaluation

    PHWGS/Ecoli_evaluation_set’s past year of commit activity
    0 1 0 0 Updated Apr 13, 2015
  • ssi-snp-pipeline Public

    bwa/elprep/gatk snp pipline by Kristoffer Kiil

    PHWGS/ssi-snp-pipeline’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Mar 23, 2015
  • PH-WGS-Meeting Public

    Info from PH WGS meetings

    PHWGS/PH-WGS-Meeting’s past year of commit activity
    0 0 0 0 Updated Mar 18, 2015
  • ssi-listeria-molsero Public

    molecular serotyping script for Listeria monocytogenes by Kristoffer Kiil

    PHWGS/ssi-listeria-molsero’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Feb 16, 2015

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