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molecular serotyping script for Listeria monocytogenes by Kristoffer Kiil

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ssi-listeria-molsero

molecular serotyping script for Listeria monocytogenes by Kristoffer Kiil

Requirements: python3 and bwa in path

Usage: Molsero.py -p primers.fsa contigfile.fsa

Output: The detected bands and their respective sizes are output, and the predicted serotype is printed. If the pattern doesn't match a serotype, Eureka is printed instead.

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molecular serotyping script for Listeria monocytogenes by Kristoffer Kiil

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