Update parser.py

PennLINC · Sep 18, 2024 · 6126a29 · 6126a29
1 parent 5301442
commit 6126a29
Showing 1 changed file with 5 additions and 9 deletions.
diff --git a/xcp_d/cli/parser.py b/xcp_d/cli/parser.py
@@ -1042,16 +1042,12 @@ def _validate_parameters(opts, build_log, parser):
         opts.dcan_correlation_lengths = [c for c in opts.dcan_correlation_lengths if c != "all"]
 
     # Load the confound configuration file
-    confounds_config = opts.confounds_config
-    if isinstance(confounds_config, str) and confounds_config != "none":
-        confounds_config = load_data.readable(f"nuisance/{confounds_config}.yml")
-    elif isinstance(confounds_config, str):
-        confounds_config = Path(confounds_config)
-
-    if confounds_config != "none":
-        opts.confounds_config = confounds_config
-    else:
+    if isinstance(opts.confounds_config, str) and opts.confounds_config != "none":
+        opts.confounds_config = load_data.readable(f"nuisance/{opts.confounds_config}.yml")
+    elif opts.confounds_config == "none":
         opts.confounds_config = None
+    else:
+        opts.confounds_config = Path(opts.confounds_config).resolve()
 
     # Bandpass filter parameters
     if opts.high_pass <= 0 and opts.low_pass <= 0: