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Replace restricted confound sets with config files #1255

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Replace restricted confound sets with config files #1255

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Commits on Sep 4, 2024

  1. Draft config files for nuisance strategies.

    @tsalo
    tsalo committed Sep 4, 2024
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Commits on Sep 5, 2024

  1. Write other nuisance strategies.

    @tsalo
    tsalo committed Sep 5, 2024
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  2. Add derivatives parameter.

    @tsalo
    tsalo committed Sep 5, 2024
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  3. Update function name.

    @tsalo
    tsalo committed Sep 5, 2024
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  4. Work on collecting confounds across datasets.

    @tsalo
    tsalo committed Sep 5, 2024
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  5. Update bids.py

    @tsalo
    tsalo committed Sep 5, 2024
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Commits on Sep 7, 2024

  1. Update.

    @tsalo
    tsalo committed Sep 7, 2024
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Commits on Sep 8, 2024

  1. mod

    @tsalo
    tsalo committed Sep 8, 2024
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Commits on Sep 9, 2024

  1. More work.

    @tsalo
    tsalo committed Sep 9, 2024
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  2. Keep working.

    @tsalo
    tsalo committed Sep 9, 2024
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Commits on Sep 10, 2024

  1. Keep working. 

    I'm going to put the filtered motion parameters in the same file as the unfiltered ones, with `_filtered` appended to the column names.
    @tsalo
    tsalo committed Sep 10, 2024
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  2. Keep working.

    @tsalo
    tsalo committed Sep 10, 2024
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  3. Keep working.

    @tsalo
    tsalo committed Sep 10, 2024
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Commits on Sep 11, 2024

  1. Lots more work.

    @tsalo
    tsalo committed Sep 11, 2024
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  2. Keep working.

    @tsalo
    tsalo committed Sep 11, 2024
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  3. Update.

    @tsalo
    tsalo committed Sep 11, 2024
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  4. Keep working.

    @tsalo
    tsalo committed Sep 11, 2024
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  5. Keep working.

    @tsalo
    tsalo committed Sep 11, 2024
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  6. More work.

    @tsalo
    tsalo committed Sep 11, 2024
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  7. More work.

    @tsalo
    tsalo committed Sep 11, 2024
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  8. Update censoring.py

    @tsalo
    tsalo committed Sep 11, 2024
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  9. Okay may this'll work?

    @tsalo
    tsalo committed Sep 11, 2024
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  10. Merge remote-tracking branch 'upstream/main' into custom-playground

    @tsalo
    tsalo committed Sep 11, 2024
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  11. Try this.

    @tsalo
    tsalo committed Sep 11, 2024
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  12. More changes.

    @tsalo
    tsalo committed Sep 11, 2024
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  13. More changes.

    @tsalo
    tsalo committed Sep 11, 2024
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  14. More work.

    @tsalo
    tsalo committed Sep 11, 2024
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  15. More... work.

    @tsalo
    tsalo committed Sep 11, 2024
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  16. Modify stuff.

    @tsalo
    tsalo committed Sep 11, 2024
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Commits on Sep 13, 2024

  1. Fix up nuisance configs.

    @tsalo
    tsalo committed Sep 13, 2024
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  2. Update parcellation.py

    @tsalo
    tsalo committed Sep 13, 2024
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  3. Merge remote-tracking branch 'upstream/main' into custom-playground

    @tsalo
    tsalo committed Sep 13, 2024
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  4. Fix style issues.

    @tsalo
    tsalo committed Sep 13, 2024
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  5. Update bids.py

    @tsalo
    tsalo committed Sep 13, 2024
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  6. Merge remote-tracking branch 'upstream/main' into custom-playground

    @tsalo
    tsalo committed Sep 13, 2024
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  7. Update surface.py

    @tsalo
    tsalo committed Sep 13, 2024
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  8. Update censoring.py

    @tsalo
    tsalo committed Sep 13, 2024
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Commits on Sep 17, 2024

  1. Merge remote-tracking branch 'upstream/main' into custom-playground

    @tsalo
    tsalo committed Sep 17, 2024
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  2. Merge remote-tracking branch 'upstream/main' into custom-playground

    @tsalo
    tsalo committed Sep 17, 2024
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Commits on Sep 18, 2024

  1. Replace tabs with spaces.

    @tsalo
    tsalo committed Sep 18, 2024
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  2. Fix cosine search pattern.

    @tsalo
    tsalo committed Sep 18, 2024
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  3. Fix some stuff.

    @tsalo
    tsalo committed Sep 18, 2024
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  4. Update plotting.py

    @tsalo
    tsalo committed Sep 18, 2024
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  5. Fix rmsd and SVD issues.

    @tsalo
    tsalo committed Sep 18, 2024
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  6. Ignore cohort as well.

    @tsalo
    tsalo committed Sep 18, 2024
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  7. Support "none" option.

    @tsalo
    tsalo committed Sep 18, 2024
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  8. Update censoring.py

    @tsalo
    tsalo committed Sep 18, 2024
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  9. Update parser.py

    @tsalo
    tsalo committed Sep 18, 2024
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  10. Try fixing again.

    @tsalo
    tsalo committed Sep 18, 2024
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  11. Try fixing none again.

    @tsalo
    tsalo committed Sep 18, 2024
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  12. Fix fix fix.

    @tsalo
    tsalo committed Sep 18, 2024
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Commits on Sep 19, 2024

  1. Maybe fix.

    @tsalo
    tsalo committed Sep 19, 2024
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  2. Make confounds_tsv optional.

    @tsalo
    tsalo committed Sep 19, 2024
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