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Updated parsing of chewbbaca cgMLST error codes #88

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@mhkc mhkc commented Sep 3, 2024

This PR updates parsing of chewbbaca errors and adds CI/CD tests for the parsing. replace_cgmlst_errors now logs if an allele could not be cast as an integer.

@mhkc mhkc linked an issue Sep 3, 2024 that may be closed by this pull request
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@mhkc mhkc merged commit 7cff73f into master Sep 4, 2024
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@mhkc mhkc deleted the 87-update-cgmlst-model-and-parser-regarding-chewbbaca-errors branch September 4, 2024 07:06
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Update cgmlst model and parser regarding chewbbaca errors
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