Merge pull request #67 from TimMonko/examples

Add more examples, including Measure Widget usage
TimMonko · Sep 22, 2024 · 122bd27 · 122bd27
2 parents 2e6382a + d81d474
commit 122bd27
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diff --git a/docs/examples/.log.txt b/docs/examples/.log.txt
diff --git a/docs/examples/Labels/cropped_neuron.ome b/docs/examples/Labels/cropped_neuron.ome
diff --git a/docs/examples/Labels/cropped_neuron.ome.tiff b/docs/examples/Labels/cropped_neuron.ome.tiff
diff --git a/docs/examples/measure/data/.log.txt b/docs/examples/measure/data/.log.txt
diff --git a/docs/examples/measure/data/measure_props_Morphology.csv b/docs/examples/measure/data/measure_props_Morphology.csv
diff --git a/docs/examples/measure/data/measure_props_Morphology_grouped.csv b/docs/examples/measure/data/measure_props_Morphology_grouped.csv
@@ -0,0 +1,48 @@
+id,date,HIC,well,scene,intensity_max-DAPI Class,chelation,label_count,area_mean
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diff --git a/...re/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_107_106_P1-H9.ome.tiff b/...re/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_107_106_P1-H9.ome.tiff
diff --git a/...asure/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_10_9_P8-B9.ome.tiff b/...asure/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_10_9_P8-B9.ome.tiff
diff --git a/...sure/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_25_24_P8-C9.ome.tiff b/...sure/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_25_24_P8-C9.ome.tiff
diff --git a/...easure/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_2_1_P4-A9.ome.tiff b/...easure/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_2_1_P4-A9.ome.tiff
diff --git a/...sure/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_56_55_P8-D9.ome.tiff b/...sure/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_56_55_P8-D9.ome.tiff
diff --git a/...sure/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_57_56_P4-E9.ome.tiff b/...sure/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_57_56_P4-E9.ome.tiff
diff --git a/...sure/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_58_57_P3-E9.ome.tiff b/...sure/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_58_57_P3-E9.ome.tiff
diff --git a/...sure/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_99_98_P8-G9.ome.tiff b/...sure/labels/2024-08-07 25x 24HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_99_98_P8-G9.ome.tiff
diff --git a/...e/labels/2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_132_131_P20-H9.ome.tiff b/...e/labels/2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_132_131_P20-H9.ome.tiff
diff --git a/...sure/labels/2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_36_35_P6-C9.ome.tiff b/...sure/labels/2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_36_35_P6-C9.ome.tiff
diff --git a/...sure/labels/2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_42_41_P7-C9.ome.tiff b/...sure/labels/2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_42_41_P7-C9.ome.tiff
diff --git a/...sure/labels/2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_46_45_P6-D9.ome.tiff b/...sure/labels/2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_46_45_P6-D9.ome.tiff
diff --git a/...ure/labels/2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_52_51_P10-D9.ome.tiff b/...ure/labels/2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_52_51_P10-D9.ome.tiff
diff --git a/...sure/labels/2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_70_69_P7-E9.ome.tiff b/...sure/labels/2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_70_69_P7-E9.ome.tiff
diff --git a/...ure/labels/2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_95_94_P11-F9.ome.tiff b/...ure/labels/2024-08-07 25x 48HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_95_94_P11-F9.ome.tiff
diff --git a/...re/labels/2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_110_109_P4-H9.ome.tiff b/...re/labels/2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_110_109_P4-H9.ome.tiff
diff --git a/...sure/labels/2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_17_12_P6-B9.ome.tiff b/...sure/labels/2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_17_12_P6-B9.ome.tiff
diff --git a/...easure/labels/2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_1_0_P8-B9.ome.tiff b/...easure/labels/2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_1_0_P8-B9.ome.tiff
diff --git a/...sure/labels/2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_22_21_P7-B9.ome.tiff b/...sure/labels/2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_22_21_P7-B9.ome.tiff
diff --git a/...ure/labels/2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_35_34_TR2-C9.ome.tiff b/...ure/labels/2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_35_34_TR2-C9.ome.tiff
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diff --git a/...sure/labels/2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_56_55_P7-D9.ome.tiff b/...sure/labels/2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_56_55_P7-D9.ome.tiff
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diff --git a/...sure/labels/2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_98_97_P9-G9.ome.tiff b/...sure/labels/2024-08-07 25x 72HIC NCOA4 647 FT 568 PHALL 488 DAPI OBL_98_97_P9-G9.ome.tiff
diff --git a/docs/examples/measure/measure_widget.ipynb b/docs/examples/measure/measure_widget.ipynb