v0.2.0

BREAKING

• the prep and align subcommands have been removed from the CLI
• no longer support MSA (.sto) query files

Features

• no longer depends on hmmbuild
• added support for sequence to sequence search
• gained a bit of sensitivity by running mmseqs search at two profile relative entropy targets
• the null two (composition bias) score correction has been improved for sparse alignment
• tabular results formatting improved

0.1.0

This is the initial 0.1.0 release. The library is unfinished, unstable, and largely undocumented.