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Move to jmd tutorials #113

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merged 51 commits into from
Apr 23, 2021
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5b34d80
added the main file from SciML
torfjelde Sep 24, 2020
c9814b6
re-did the introduction to VI file
torfjelde Sep 24, 2020
84d3861
added compat section to VI tutorial
torfjelde Sep 24, 2020
653dfc0
updated Project.toml
torfjelde Sep 24, 2020
c93180e
moved all the files and removed notebooks
torfjelde Sep 24, 2020
7ea0e8f
renamed file
torfjelde Sep 24, 2020
65263c8
renamed file CORRECTLY
torfjelde Sep 24, 2020
9df497c
Merge branch 'jmd-staging' into tor/using-jmd
torfjelde Sep 24, 2020
6f30cee
added modifications
torfjelde Sep 24, 2020
4e0fe4d
removed dep
torfjelde Sep 24, 2020
8dda8eb
removed redundant dependencies for main Project.toml
torfjelde Sep 24, 2020
578f941
removed Maniftest.toml
torfjelde Sep 24, 2020
7932b89
added src and cleaned up deps
torfjelde Sep 24, 2020
4339740
added templates
torfjelde Sep 24, 2020
3651e50
Merge branch 'jmd-staging' into tor/using-jmd
torfjelde Sep 24, 2020
3379a7f
made all tutorials compatible with the new setup, also made sure they…
torfjelde Sep 25, 2020
6d38bcd
small update to the VI tutorial
torfjelde Sep 25, 2020
f780124
Merge pull request #87 from TuringLang/tor/using-jmd
torfjelde Sep 25, 2020
92af753
added footers to all tutorials, and fixed tutorial_footer
torfjelde Sep 25, 2020
bd26aaa
made suggested changes
torfjelde Sep 27, 2020
024be86
Merge pull request #88 from TuringLang/tor/jmd-weaving
torfjelde Sep 27, 2020
1410950
fixed footer and are now using dollar-signs for both inline and equat…
torfjelde Nov 25, 2020
a93b2aa
added polish_latex for replacing escape characters
torfjelde Nov 26, 2020
c8e708b
now will export gifs in markdown properly
torfjelde Mar 5, 2021
ca0d067
every tutorial now has its own folder
torfjelde Mar 5, 2021
acef10c
Merge pull request #103 from TuringLang/tor/jmd-restructure
cpfiffer Mar 5, 2021
a089a3d
removed usage of turnprogress and fixed footer
torfjelde Mar 6, 2021
b2b5ee2
restrict FileIO due to bugs caused for RDatasets
torfjelde Mar 6, 2021
7ba5e70
small style change
torfjelde Mar 6, 2021
6fd97b6
fixed an animation in HMM tutorial
torfjelde Mar 6, 2021
3424506
added initial markdown files
torfjelde Mar 6, 2021
577044e
added multinomial markdown
torfjelde Mar 6, 2021
ffe2362
Merge pull request #105 from TuringLang/tor/jmd-final-changes
cpfiffer Mar 6, 2021
b17e43a
Merge pull request #106 from TuringLang/tor/jmd-markdown
cpfiffer Mar 6, 2021
2ee1fce
added variational inference and differential equations
torfjelde Mar 7, 2021
3f06890
Merge pull request #107 from TuringLang/tor/jmd-markdown
torfjelde Mar 7, 2021
04809c2
updated source file for diff eq tutorial
torfjelde Mar 7, 2021
a9d0bde
added updated diff eq tutorial
torfjelde Mar 7, 2021
68dc383
removed setting logging from diff eq tutorial since it wont show up w…
torfjelde Mar 7, 2021
438a5af
added redirects to old tutorials
torfjelde Mar 7, 2021
13d262e
Merge pull request #109 from TuringLang/tor/jmd-markdown
cpfiffer Mar 7, 2021
1de814a
Merge pull request #111 from TuringLang/tor/redirects
cpfiffer Mar 7, 2021
fe1a8ed
Merge branch 'master' into jmd-staging
cpfiffer Mar 27, 2021
d74a1f8
Weave & update
cpfiffer Apr 5, 2021
ab150ca
fix convergence in HMM tutorial
leachim Apr 7, 2021
2b79f45
update markdown, increase sample size
leachim Apr 8, 2021
4fdc191
update to latest julia version
leachim Apr 8, 2021
8d3e2c6
Update tutorials/04-hidden-markov-model/04_hidden-markov-model.jmd
leachim Apr 8, 2021
4211818
Update tutorials/04-hidden-markov-model/04_hidden-markov-model.jmd
leachim Apr 8, 2021
4be4bca
update markdown with review changes
leachim Apr 8, 2021
e5051a8
Merge pull request #115 from leachim/jmd-staging
cpfiffer Apr 9, 2021
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761 changes: 0 additions & 761 deletions 0_Introduction.ipynb

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28,938 changes: 0 additions & 28,938 deletions 10_diffeq.ipynb

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2,046 changes: 0 additions & 2,046 deletions 1_GaussianMixtureModel.ipynb

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19,298 changes: 0 additions & 19,298 deletions 2_LogisticRegression.ipynb

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2,549 changes: 0 additions & 2,549 deletions 3_BayesNN.ipynb

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652 changes: 0 additions & 652 deletions 4_BayesHmm.ipynb

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5,127 changes: 0 additions & 5,127 deletions 5_LinearRegression.ipynb

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897 changes: 0 additions & 897 deletions 6_InfiniteMixtureModel.ipynb

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11,915 changes: 0 additions & 11,915 deletions 7_PoissonRegression.ipynb

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7,456 changes: 0 additions & 7,456 deletions 8_MultinomialLogisticRegression.ipynb

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2,457 changes: 0 additions & 2,457 deletions 9_VariationalInference.ipynb

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1,646 changes: 0 additions & 1,646 deletions Manifest.toml

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30 changes: 8 additions & 22 deletions Project.toml
Original file line number Diff line number Diff line change
@@ -1,29 +1,15 @@
name = "TuringTutorials"
uuid = "09eb8af7-3c66-4d0b-a457-e0c10c662b2b"
version = "0.1.0"

[deps]
Bijectors = "76274a88-744f-5084-9051-94815aaf08c4"
ConjugatePriors = "1624bea9-42b1-5fc1-afd3-e96f729c8d6c"
DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e"
DiffEqBayes = "ebbdde9d-f333-5424-9be2-dbf1e9acfb5e"
DiffEqSensitivity = "41bf760c-e81c-5289-8e54-58b1f1f8abe2"
DifferentialEquations = "0c46a032-eb83-5123-abaf-570d42b7fbaa"
Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c"
GLM = "38e38edf-8417-5370-95a0-9cbb8c7f171a"
LaTeXStrings = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d"
MLDataUtils = "cc2ba9b6-d476-5e6d-8eaf-a92d5412d41d"
NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd"
IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a"
InteractiveUtils = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
PyPlot = "d330b81b-6aea-500a-939a-2ce795aea3ee"
RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b"
Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
StatsFuns = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd"
Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0"
Requires = "ae029012-a4dd-5104-9daa-d747884805df"
Weave = "44d3d7a6-8a23-5bf8-98c5-b353f8df5ec9"
Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"

[compat]
julia = "1"
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