Launch site.
This website allows the exploration of CRISPR interference (CRISPRi) data on enhancers in normal human astrocytes (NHAs), from Green et al. 2024. For each enhancer-gene pair tested in the screen, the following data is available:
- Statistical significance and effect size (Hit, log2FC, P, FDR), displayed in a searchable table and displayed on the corresponding Volcano plot.
- search the table by gene name or hg38 genome coordinates.
- to download the filtered data click on the CSV button.
- ATAC-seq, TT-seq, and Deep-learning-based functional variant annotation, displayed as a UCSC genome browser track collection.
- select an enhancer-gene pair in the table OR plot and click the UCSC button to navigate to the enhancer position.
- select an enhancer-gene pair and click the prediction button to navigate to the enhancer's DeepSEA (beluga) heatmap viewer.
Code for the heatmap viewer can be found here.