CLIPper in Python 3, minor bug fix

remove remaining python 2 files.
fix setup.py versioning

CLIPper in Python 3

Port clipper into python 3.7
Should fix most installation error.
Fix issue 72 failed to build spline.

CLIPper with higher test coverage

CLIPper in python 2, code cleanup and test coverage.

1.2.1

Minor Improvement to clipper to count the deleted portion of a read.

Version 1.2

CLIPper now has many options set as default.

Two major algorithmic changes have been included in this release, as well as many small bug fixes.

First CLIPper no longer asks for a --premRNA or or mRNA distribution. If a peak is found in an exon its assumed to be a peak in the mRNA and if its found in the intron its assumed to be in the pre-mRNA.

Second backend changes have reduced the variance in clipper running time. Clipper should now run in ~8 hours per sample.

encode 1.1

Small updates and bug fixes, to CLIP_analysis to make visualization easier

encode

This version of CLIPper is used in the encode processing pipeline.

release to trigger DOI

0.3.0

significantly spead up count total reads function