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46 Open 52 Closed
46 Open 52 Closed
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Issues list

tested versions of dependencies for building compass docker image
#112 opened Sep 11, 2024 by rajuadduri
need for Docker image
#111 opened Aug 13, 2024 by pengbo233
1
normalization
#110 opened Jul 22, 2024 by shimasadri
1
Seeking Guidance on Data Format (my own reaction and genes files from KEGG) Conversion for COMPASS Analysis
#108 opened Mar 26, 2024 by ptdang1001
Are there any schematics to visualize where each reaction are at relative to each subsystem?
#107 opened Mar 4, 2024 by ahdee
1
Metabolite secretion/uptake ?
#106 opened Feb 24, 2024 by kmunozforti
Analysis pipeline using RECON2.2 and metabolites
#105 opened Feb 6, 2024 by kmunozforti
AttributeError: 'DataFrame' object has no attribute 'iteritems'
#101 opened Nov 12, 2023 by zhongguozhiwang
6
Can the software use GPU to calculate the reactions.txt. Because CPU is too slow.
#100 opened Oct 28, 2023 by YzGLab
Application to UMI based technology
#99 opened Aug 15, 2023 by Harry25R
Consider using GLPK instead of CPLEX
#98 opened Jun 29, 2023 by emyr666
1
installing cplex package
#97 opened Jun 19, 2023 by bakhtiararya
Use Compass to solve a large amount of time-series bulk RNAseq data
#96 opened Jun 15, 2023 by xiaowaileeli
Run frozen at 0%
#95 opened May 30, 2023 by brycemash
1
Compass analysis from Seurat subcluster - get_reaction_consistencies issue
#90 opened Nov 29, 2022 by france-hub
9
Sample_name problem
#89 opened Nov 20, 2022 by ZachLW
2
Simulating pharmacologic inhibition through FBA?
#88 opened Nov 16, 2022 by agirgis3
where can I get more information about labeled_reactions?
#87 opened Nov 9, 2022 by qiuju-Zhang
1
multiprocessing.pool error or CPLEX error (DEMO file)
#86 opened Nov 7, 2022 by jiangzh-coder
1
Numeric entry is not a double precision number (NaN)
#84 opened Oct 10, 2022 by littleju777
1
how to run model recon3 in recon3-misc branch?
#82 opened Sep 14, 2022 by Roger-GOAT
How to do differential reaction activity analysis between samples in two conditions?
#81 opened Sep 12, 2022 by wang-tan
How to interpret reactions in GSMM without genes associated in annotation?
#79 opened Aug 6, 2022 by kpruss
expression.tsv has reactions in place of gene symbol. Gene symbol is also misspelled.
#78 opened Jul 27, 2022 by j2r2jones
How to interpreter the Compass results?
#77 opened Jul 25, 2022 by Zessi-C
1
ProTip! Updated in the last three days: updated:>2024-09-18.