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[API] Adding dicom upload #6161

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wants to merge 180 commits into from
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[API] Adding dicom upload #6161

wants to merge 180 commits into from

Commits on Oct 30, 2017

  1. Merge pull request aces#55 from aces/minor 

    [instrument_manager] Modularize instrument manager (aces#3185)
    @kongtiaowang
    kongtiaowang authored Oct 30, 2017
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Commits on Nov 2, 2017

  1. Merge pull request aces#62 from aces/minor 

    mi
    @kongtiaowang
    kongtiaowang authored Nov 2, 2017
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Commits on Nov 20, 2017

  1. Merge pull request aces#71 from aces/minor 

    minor 2017-11-20
    @kongtiaowang
    kongtiaowang authored Nov 20, 2017
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Commits on Jan 16, 2019

  1. squash

    @xlecours
    xlecours committed Jan 16, 2019
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  2. merging minor

    @xlecours
    xlecours committed Jan 16, 2019
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  3. adding candidatetable alias in where clause

    @xlecours
    xlecours committed Jan 16, 2019
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Commits on Jan 17, 2019

  1. delegating MethodNotAllowed checks to endpoints subclasses 

    adding OPTIONS requests handling
    @xlecours
    xlecours committed Jan 17, 2019
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  2. adding PUT /canddiate/$candid/$visit_label support for existsing visits

    @xlecours
    xlecours committed Jan 17, 2019
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  3. /candidates/$candid/$visit_label/instruments

    @xlecours
    xlecours committed Jan 17, 2019
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Commits on Jan 18, 2019

  1. /candidate/$candid/$visit_lable/qc/imaging

    @xlecours
    xlecours committed Jan 18, 2019
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  2. cleanup 

    put back useProject config check in candidate select
    @xlecours
    xlecours committed Jan 18, 2019
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Commits on Jan 21, 2019

  1. working on Dicoms

    @xlecours
    xlecours committed Jan 21, 2019
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Commits on Jan 23, 2019

  1. fixes

    @xlecours
    xlecours committed Jan 23, 2019
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  2. GET /candidates/$candid/$visit_label/dicoms

    @xlecours
    xlecours committed Jan 23, 2019
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  3. /canddiates/$candid/$visit_label/dicoms/$dicom

    @xlecours
    xlecours committed Jan 23, 2019
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Commits on Jan 24, 2019

  1. simplifying dataframework usage by adding DicomTar classes

    @xlecours
    xlecours committed Jan 24, 2019
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  2. moving getDicoms to timepoint class

    @xlecours
    xlecours committed Jan 24, 2019
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  3. missing class variable

    @xlecours
    xlecours committed Jan 24, 2019
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Commits on Jan 25, 2019

  1. fix phan

    @xlecours
    xlecours committed Jan 25, 2019
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  2. fix error_log

    @xlecours
    xlecours committed Jan 25, 2019
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  3. fix visit subendpoint without a visit

    @xlecours
    xlecours committed Jan 25, 2019
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Commits on Jan 28, 2019

  1. visit instrument

    @xlecours
    xlecours committed Jan 28, 2019
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Commits on Jan 31, 2019

  1. /candidates/$candid/$visit_label/images

    @xlecours
    xlecours committed Jan 31, 2019
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  2. /candidates/$candid/$visit_label/images/$image

    @xlecours
    xlecours committed Jan 31, 2019
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Commits on Feb 14, 2019

  1. working on visit images

    @xlecours
    xlecours committed Feb 14, 2019
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Commits on Feb 20, 2019

  1. Merge branch 'minor' into api-module-candidates-and-subs

    @xlecours
    xlecours authored Feb 20, 2019
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  2. working on Image

    @xlecours
    xlecours committed Feb 20, 2019
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  3. Merge branch 'api-module-candidates-and-subs' of github.com:xlecours/… 

    …Loris into api-module-candidates-and-subs
    @xlecours
    xlecours committed Feb 20, 2019
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  4. Update modules/api/php/candidatesprovisioner.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  5. Update modules/api/php/candidatesprovisioner.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  6. Update modules/api/php/candidatesprovisioner.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  7. Update modules/api/php/candidatesrow.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  8. Update modules/api/php/candidatesrow.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  9. Update modules/api/php/projectimagesrowprovisioner.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  10. Update src/Api/Endpoints/Candidate/Visit/Image/Image.php 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  11. Update src/Api/Endpoints/Candidate/Visit/Dicoms.php 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  12. Update src/Api/Endpoints/Candidate/Visit/Dicoms.php 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  13. Update src/Api/Endpoints/Candidate/Visit/Dicoms.php 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  14. Update src/Api/Endpoints/Candidate/Visit/Dicoms.php 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  15. Update modules/api/php/projectinstrumentsrow.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  16. Update src/Api/Endpoints/Candidate/Visit/Dicom/Dicom.php 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  17. Update modules/api/php/projectinstrumentsrow.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  18. Update modules/api/php/projectinstrumentsrow.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  19. Update modules/api/php/projectinstrumentsrow.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  20. Update modules/api/php/projectinstrumentsrow.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  21. Update modules/api/php/projectinstrumentsrow.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  22. Update modules/api/php/projectinstrumentsrow.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  23. Update modules/api/php/projectinstrumentsrowprovisioner.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  24. Update modules/api/php/projectinstrumentsrowprovisioner.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  25. Update modules/api/php/visitdicomrow.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  26. Update modules/api/php/visitdicomrowprovisioner.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  27. Update modules/api/php/visitdicomsrowprovisioner.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  28. Update modules/api/php/visitimagesrowprovisioner.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  29. Update modules/api/php/visitimagingqcrow.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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  30. Update modules/api/php/visitimagingqcrow.class.inc 

    Co-Authored-By: xlecours <[email protected]>
    @PapillonMcGill @xlecours
    PapillonMcGill and xlecours authored Feb 20, 2019
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Commits on Feb 21, 2019

  1. Cecile`s comments

    @xlecours
    xlecours committed Feb 21, 2019
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  2. merging

    @xlecours
    xlecours committed Feb 21, 2019
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  3. fix scope for mapper functions

    @xlecours
    xlecours committed Feb 21, 2019
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  4. adding a test

    @xlecours
    xlecours committed Feb 21, 2019
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  5. fix PhanStaticCallToNonStatic Static call to non-static method

    @xlecours
    xlecours committed Feb 21, 2019
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  6. PhanUndeclaredTypeProperty

    @xlecours
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  7. plus one

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Commits on Feb 22, 2019

  1. instrumentdata

    @xlecours
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  2. test for test

    @xlecours
    xlecours committed Feb 22, 2019
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  3. Instrument[dde] GET PUT PATCH and flags GET

    @xlecours
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  4. flags + test

    @xlecours
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  5. Flags PUT/PATCH not implemented

    @xlecours
    xlecours committed Feb 22, 2019
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  6. phpcs

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Commits on Feb 28, 2019

  1. working on QC

    @xlecours
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Commits on Mar 1, 2019

  1. replace

    @xlecours
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  2. Merge remote-tracking branch 'aces/minor' into api-module-candidates-… 

    …and-subs
    @xlecours
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Commits on Mar 4, 2019

  1. caveats

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Commits on Apr 29, 2019

  1. file etag

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Commits on Apr 30, 2019

  1. image qc

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Commits on May 1, 2019

  1. image format raw

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Commits on May 3, 2019

  1. images format 2/3

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  2. remove 1 erro log

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Commits on Jun 13, 2019

  1. fix image output

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Commits on Jun 14, 2019

  1. thumbnail

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  2. headers

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Commits on Jun 25, 2019

  1. Merge tag 'minor' into api-module-candidates-and-subs

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Commits on Jul 2, 2019

  1. fix conflicts

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Commits on Jul 4, 2019

  1. fix phpcs 

    now using ImageQcStatus as a value object
    @xlecours
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  2. fix phpcs

    @xlecours
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Commits on Jul 11, 2019

  1. column name

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  2. Merge remote-tracking branch 'aces/minor' into api-module-candidates-… 

    …and-subs
    @xlecours
    xlecours committed Jul 11, 2019
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Commits on Jul 12, 2019

  1. rebase after 21.0 release 

    retest 1/2
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Commits on Jul 19, 2019

  1. finish testing after rebase

    @xlecours
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Commits on Jul 22, 2019

  1. dave`s point

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  2. addressing comments 

    moving some DTO in \data\models
    @xlecours
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  3. Merge remote-tracking branch 'aces/minor' into api-module-candidates-… 

    …and-subs
    @xlecours
    xlecours committed Jul 22, 2019
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Commits on Jul 23, 2019

  1. addressing phan complaints

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  2. more phan

    @xlecours
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  3. Merge remote-tracking branch 'aces/minor' into api-module-candidates-… 

    …and-subs
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Commits on Jul 26, 2019

  1. some cleanup

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Commits on Jul 29, 2019

  1. Merge remote-tracking branch 'aces/minor' into api-module-candidates-… 

    …and-subs
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  2. cleanup and uniformity

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Commits on Aug 1, 2019

  1. adding comments on filters

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  2. explicit projectinstrumentsrow

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  3. removing upsolete file

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Commits on Aug 2, 2019

  1. replacing VisitImagingQcRowProvisioner by TimePointImagingQC accessor… 

    … in TimePoint
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  2. replacing visitinstrumentsrowprovisioner by timepoint->getInstrumentN… 

    …ames()
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  3. renameing api/test/login

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  4. adressing Cecile`s comment

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    xlecours committed Aug 2, 2019
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  5. removing renamed class

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    xlecours committed Aug 2, 2019
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  6. fix comments

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    xlecours committed Aug 2, 2019
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  7. changing license

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    xlecours committed Aug 2, 2019
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  8. fix comments 

    fix visibility
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  9. fix phan 

    fix visibility
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  10. fix visibility

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  11. uniformity

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Commits on Aug 4, 2019

  1. done with Endpoints

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  2. views 1/2

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Commits on Aug 5, 2019

  1. almost there

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  2. ok

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  3. typo

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  4. fix typo found by phan

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  5. iterator_to_array

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  6. Update modules/api/php/projectinstrumentsrow.class.inc 

    Co-Authored-By: John Saigle <[email protected]>
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    xlecours and johnsaigle authored Aug 5, 2019
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  7. Update modules/api/test/login_Test.php 

    Co-Authored-By: John Saigle <[email protected]>
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    xlecours and johnsaigle authored Aug 5, 2019
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  8. Update php/libraries/InstrumentFlags.class.inc 

    Co-Authored-By: John Saigle <[email protected]>
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    xlecours and johnsaigle authored Aug 5, 2019
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  9. removing mentions of v0.0.1

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  10. Update src/Api/Endpoints/Projects.php 

    Co-Authored-By: John Saigle <[email protected]>
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    xlecours and johnsaigle authored Aug 5, 2019
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Commits on Aug 6, 2019

  1. fix test

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Commits on Aug 8, 2019

  1. Apply suggestions from code review 

    Melanie's comments

Co-Authored-By: PapillonMcGill <[email protected]>
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    xlecours and PapillonMcGill authored Aug 8, 2019
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Commits on Aug 9, 2019

  1. fix line length

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    xlecours committed Aug 9, 2019
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Commits on Aug 12, 2019

  1. adressing john`s comment

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  2. fix visit dicomtars query

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    xlecours committed Aug 12, 2019
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  3. now using MICToolPath config setting

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    xlecours committed Aug 12, 2019
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  4. Merge remote-tracking branch 'aces/minor' into api-module-candidates-… 

    …and-subs
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    xlecours committed Aug 12, 2019
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Commits on Aug 13, 2019

  1. fix null visit bug

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    xlecours committed Aug 13, 2019
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Commits on Sep 20, 2019

  1. fix conflicts

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    xlecours committed Sep 20, 2019
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  2. submit to phan tyranny

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Commits on Sep 23, 2019

  1. Update modules/api/php/candidatesprovisioner.class.inc 

    Co-Authored-By: Dave MacFarlane <[email protected]>
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  2. Update modules/api/php/projectimagesrow.class.inc 

    Co-Authored-By: Dave MacFarlane <[email protected]>
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  3. changing double quotes for single quotes in SQL statement 

    using FileStream
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  4. Merge branch 'api-module-candidates-and-subs' of github.com:xlecours/… 

    …Loris into api-module-candidates-and-subs
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Commits on Sep 26, 2019

  1. removing forUser

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  2. phantoms and scans filters

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    xlecours committed Sep 26, 2019
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Commits on Sep 27, 2019

  1. removing unused reference

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  2. Merge remote-tracking branch 'aces/minor' into moving_api_to_module

    @xlecours
    xlecours committed Sep 27, 2019
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Commits on Sep 30, 2019

  1. moving

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  2. better explanation for DicomTar class

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    xlecours committed Sep 30, 2019
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  3. using CallbackStream for minctoraw

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  4. using subdirectories for Data

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    xlecours committed Sep 30, 2019
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  5. adding autoloader to tests

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Commits on Oct 1, 2019

  1. removed dev file

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Commits on Oct 15, 2019

  1. fix conflict

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    xlecours committed Oct 15, 2019
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  2. first pass at uploading with POST

    @xlecours
    xlecours committed Oct 15, 2019
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  3. dicom upload

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    xlecours committed Oct 15, 2019
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  4. preliminary doc

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    xlecours committed Oct 15, 2019
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  5. markdown

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  6. plus one

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  7. addressing Cecile`s comments

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    xlecours committed Oct 15, 2019
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  8. patien name and phantoms

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    xlecours committed Oct 15, 2019
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  9. fix phan

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  10. rebased

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  11. fix phan

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  12. fix conflicts

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Commits on Dec 9, 2019

  1. rebased after 22 release

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  2. phpcs

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  3. phplint

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  4. yet another found by run-php-linter.sh

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Commits on Jan 20, 2020

  1. Merge remote-tracking branch 'aces/master' into adding_dicom_upload

    @xlecours
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  2. Update docs/API/LorisRESTAPI_v0.0.3.md 

    Co-Authored-By: cmadjar <[email protected]>
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    xlecours and cmadjar authored Jan 20, 2020
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  3. Apply suggestions from code review 

    Cecile's suggestions

Co-Authored-By: cmadjar <[email protected]>
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  4. phan checks

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Commits on Jan 28, 2020

  1. changes that we made together

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  2. Merge pull request #6 from cmadjar/adding_dicom_upload_minor_changes 

    changes that we made together
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Commits on Feb 4, 2020

  1. Merge remote-tracking branch 'aces/master' into adding_dicom_upload

    @xlecours
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  2. adjusting namepsace changes to JSON responses

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    xlecours committed Feb 4, 2020
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  3. modules/api/php/endpoints/candidate/visit/dicoms.class.inc

    @xlecours
    xlecours committed Feb 4, 2020
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  4. fix conflict

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Commits on Mar 16, 2020

  1. rebased

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  2. lint

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Commits on Jun 23, 2021

  1. adding dicom upload

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Commits on Jun 28, 2021

  1. merge rida rebased

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    xlecours committed Jun 28, 2021
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  2. fix Short array syntax

    @xlecours
    xlecours committed Jun 28, 2021
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  3. fix Short array syntax

    @xlecours
    xlecours committed Jun 28, 2021
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  4. fix phan

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    xlecours committed Jun 28, 2021
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