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Alternative GHA structure for nf-core/modules #6

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Alternative GHA structure for nf-core/modules

Alternative GHA structure for nf-core/modules #6

Triggered via pull request July 28, 2023 11:12
@adamrtalbotadamrtalbot
synchronize #2
new_gha_set_up
Status Cancelled
Total duration 11m 17s
Artifacts –

test.yml

on: pull_request
Prettier
28s
Prettier
EditorConfig
14s
EditorConfig
check-for-changes
6s
check-for-changes
Matrix: nf-core-lint
Matrix: nf-test
Matrix: pytest-workflow
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6 errors and 14 warnings
pytest-workflow (fastqc, conda)
Process completed with exit code 1.
pytest-workflow (fastqc, conda)
The operation was canceled.
pytest-workflow (samtools/index, docker)
The operation was canceled.
pytest-workflow (samtools/index, conda)
The operation was canceled.
pytest-workflow (fastqc, singularity)
The operation was canceled.
pytest-workflow (samtools/index, singularity)
The operation was canceled.
EditorConfig
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-node@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Prettier
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-node@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-core-lint (gatk4/haplotypecaller)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-core-lint (fastqc)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
nf-core-lint (samtools/index)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest-workflow (gatk4/haplotypecaller, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest-workflow (gatk4/haplotypecaller, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest-workflow (fastqc, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest-workflow (gatk4/haplotypecaller, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest-workflow (fastqc, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest-workflow (samtools/index, docker)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest-workflow (samtools/index, conda)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest-workflow (fastqc, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest-workflow (samtools/index, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2, eWaterCycle/setup-singularity@v5. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/