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@ag-computational-bio

Bioinformatics and Systems Biology @ JLU Gießen

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  1. bakta bakta Public

    Forked from oschwengers/bakta

    Rapid & standardized annotation of bacterial genomes & plasmids

    Python 1

  2. ReadXplorer ReadXplorer Public

    ReadXplorer - Visualization and Analysis of Mapped Sequences

    Java 3

  3. asap asap Public

    Forked from oschwengers/asap

    A scalable bacterial genome assembly, annotation and analysis pipeline

    Groovy 1

  4. BioDataDBCLI BioDataDBCLI Public

    Go 1

  5. ecf_classify ecf_classify Public

    Forked from r-mllr/ecf_classify

    Command-line tool for classifying proteins into ECFs

    Ruby

Repositories

Showing 10 of 26 repositories
  • bakrep-web Public

    The user interface for bakrep

    ag-computational-bio/bakrep-web’s past year of commit activity
    HTML 2 0 8 0 Updated Nov 6, 2024
  • bakta Public Forked from oschwengers/bakta

    Rapid & standardized annotation of bacterial genomes & plasmids

    ag-computational-bio/bakta’s past year of commit activity
    Python 1 GPL-3.0 55 0 0 Updated Oct 29, 2024
  • bakrep-cli Public

    Commandline tool to (batch) download bakrep datasets

    ag-computational-bio/bakrep-cli’s past year of commit activity
    Python 4 GPL-3.0 0 0 0 Updated Sep 23, 2024
  • bakta-web-ui Public

    UI for Bakta web app

    ag-computational-bio/bakta-web-ui’s past year of commit activity
    Vue 3 GPL-3.0 1 3 0 Updated Aug 26, 2024
  • bakta-web-backend Public

    Backend to schedule bakta jobs on a Kubernetes cluster

    ag-computational-bio/bakta-web-backend’s past year of commit activity
    Go 0 GPL-3.0 0 7 (1 issue needs help) 0 Updated Jul 19, 2024
  • bakrep Public
    ag-computational-bio/bakrep’s past year of commit activity
    Python 4 GPL-3.0 0 1 0 Updated Jun 26, 2024
  • sorfdb Public

    Workflows for the sORFdb database

    ag-computational-bio/sorfdb’s past year of commit activity
    Jupyter Notebook 2 AGPL-3.0 0 0 0 Updated Jun 19, 2024
  • ReadXplorer Public

    ReadXplorer - Visualization and Analysis of Mapped Sequences

    ag-computational-bio/ReadXplorer’s past year of commit activity
    Java 3 GPL-3.0 0 6 0 Updated Nov 30, 2023
  • kubernetes-course Public

    Official documentation and hands-on examples for the kubernetes training course

    ag-computational-bio/kubernetes-course’s past year of commit activity
    4 MIT 5 0 0 Updated Nov 28, 2023
  • asap Public Forked from oschwengers/asap

    A scalable bacterial genome assembly, annotation and analysis pipeline

    ag-computational-bio/asap’s past year of commit activity
    Groovy 1 GPL-3.0 19 0 0 Updated Sep 21, 2023
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