Repositories list

• bakrep-web

  Public
  The user interface for bakrep

  HTML

  •0•2•8•0•Updated Nov 6, 2024Nov 6, 2024

• bakta

  Public
  Rapid & standardized annotation of bacterial genomes & plasmids

  Python

  •

  GNU General Public License v3.0

  •55•1•0•0•Updated Oct 29, 2024Oct 29, 2024

• bakrep-cli

  Public
  Commandline tool to (batch) download bakrep datasets

  Python

  •

  GNU General Public License v3.0

  •0•4•0•0•Updated Sep 23, 2024Sep 23, 2024

• bakta-web-ui

  Public
  UI for Bakta web app

  Vue

  •

  GNU General Public License v3.0

  •1•3•3•0•Updated Aug 26, 2024Aug 26, 2024

• bakta-web-backend

  Public
  Backend to schedule bakta jobs on a Kubernetes cluster

  Go

  •

  GNU General Public License v3.0

  •0•0•7•0•Updated Jul 19, 2024Jul 19, 2024

• bakrep

  Public
  Python

  •

  GNU General Public License v3.0

  •0•4•1•0•Updated Jun 26, 2024Jun 26, 2024

• sorfdb

  Public
  Workflows for the sORFdb database

  Jupyter Notebook

  •

  GNU Affero General Public License v3.0

  •0•2•0•0•Updated Jun 19, 2024Jun 19, 2024

• ReadXplorer

  Public
  ReadXplorer - Visualization and Analysis of Mapped Sequences

  rna-seqtranscriptomicsgenome-alignment+ 1visualization

  Java

  •

  GNU General Public License v3.0

  •0•3•6•0•Updated Nov 30, 2023Nov 30, 2023

• kubernetes-course

  Public
  Official documentation and hands-on examples for the kubernetes training course

  MIT License

  •5•4•0•0•Updated Nov 28, 2023Nov 28, 2023

• asap

  Public
  A scalable bacterial genome assembly, annotation and analysis pipeline

  Groovy

  •

  GNU General Public License v3.0

  •19•1•0•0•Updated Sep 21, 2023Sep 21, 2023

• bakta-docs

  Public
  GNU General Public License v3.0

  •0•1•0•0•Updated Aug 1, 2022Aug 1, 2022

• wasp

  Public
  Web-Accessible Single Cell RNA-Seq Processing Platform

  R

  •1•0•0•0•Updated Feb 11, 2022Feb 11, 2022

• referenceseeker

  Public
  Rapid determination of appropriate reference genomes.

  Python

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated Sep 7, 2021Sep 7, 2021

• platon

  Public
  Identification and characterization of bacterial plasmid contigs from short-read draft assemblies.

  Python

  •

  GNU General Public License v3.0

  •15•0•0•0•Updated Sep 7, 2021Sep 7, 2021

• bakta-web-cleaner

  Public
  Implements a reoccuring job that deals with straggler jobs and expired jobs

  Go

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 9, 2021Jun 9, 2021

• LegionellaProject

  Public
  Go

  •0•0•0•0•Updated Dec 23, 2020Dec 23, 2020

• dib-builder

  Public
  Build script for cloud images based on diskimage-builder

  Python

  •0•0•0•0•Updated Nov 2, 2020Nov 2, 2020

• BioDataDBModels

  Public
  Go

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 7, 2020Oct 7, 2020

• BioDataDBCLI

  Public
  Go

  •

  Apache License 2.0

  •1•0•3•0•Updated Oct 5, 2020Oct 5, 2020

• BioProtobufParser

  Public
  Fasta and gbff to protobuf converter.

  Go

  •

  Apache License 2.0

  •1•0•1•0•Updated Sep 23, 2020Sep 23, 2020

• BioProtobufSchemas

  Public
  Protobuf Schemas to describe gbff and fasta files.

  Apache License 2.0

  •0•0•0•0•Updated Jul 9, 2020Jul 9, 2020

• nf-hello

  Public
  Classic hello world script in Nextflow language

  Nextflow

  •

  GNU General Public License v3.0

  •116•0•0•0•Updated May 14, 2020May 14, 2020

• greenlight-logo

  Public
  0•0•0•0•Updated Apr 24, 2020Apr 24, 2020

• mattermost-plugin-bigbluebutton

  Public
  BigBlueButton plugin for Mattermost 🔌

  JavaScript

  •

  Apache License 2.0

  •42•0•0•0•Updated Apr 23, 2020Apr 23, 2020

• ecf_classify

  Public
  Command-line tool for classifying proteins into ECFs

  Ruby

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Mar 2, 2020Mar 2, 2020

• image.bioinfo-desktop

  Public
  Cloud image recipe providing a desktop and bioinformatic tools

  Shell

  •0•0•0•0•Updated Apr 5, 2018Apr 5, 2018