Skip to content

Issues: amplab/snap

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

27 Open 107 Closed
27 Open 107 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Extend Alt contigs option to allow mapping to two haplotypes genomes.
#169 opened Dec 12, 2023 by ghuls
Feature request: name sort output
#166 opened Apr 5, 2023 by matthdsm
mapping HiC read
#165 opened Feb 25, 2023 by yangfangyuan0102
bug (?): unexpected results with enforced interval size greater than default
#162 opened Oct 15, 2022 by eboyden
4
feature request: print LB/PL/PU/SM tags only in @RG header line
#159 opened Oct 3, 2022 by eboyden
Feature request: markduplicate metrics and settings
#158 opened Aug 25, 2022 by matthdsm
Indel calling
#154 opened May 31, 2022 by kokyriakidis
3
feature request: option to mark optical duplicates only
#147 opened Jan 6, 2022 by eboyden
1
Duplicate marking produces malformed QS tags in SAM output
#145 opened Jan 6, 2022 by eboyden
@bolosky
3
better handling of complex indel situations
#143 opened Dec 27, 2021 by bwlang
3
Original fastq order
#127 opened Nov 11, 2020 by jkbonfield
2
-F option yielding incongruous output
#119 opened Feb 25, 2019 by cxr5298
Test failure on ppc64 and sparc64
#112 opened Dec 21, 2017 by tillea
Test suite failure on ppc64 and sparc64 architectures
#110 opened Dec 20, 2017 by tillea
Public docker image?
#101 opened Jul 19, 2017 by sminot
2
'SNAPCommand exit' doesn't when previous job killed.
#90 opened May 22, 2017 by taltman
Typo in Makefile for building snapxl
#89 opened May 22, 2017 by taltman
Error message about long reads needs to be updated
#88 opened May 22, 2017 by taltman
can you help explain the question about the RAM used by snap
#86 opened Mar 29, 2017 by wangzhenkeep
Build requires 188 GB of memory (fortunately not used, just allocated)
#82 opened Jan 30, 2017 by tillea
1
SNAP crashes when it tries to generate a BAM file with > 2GB header
#76 opened Aug 18, 2016 by bolosky
@rnpandya
Inconsistent BAM output from identical inputs
#72 opened Apr 4, 2016 by blahah
5
Tiny fraction of reads mapped
#61 opened Nov 1, 2015 by blahah
10
Invalid SM tag in sam record
#54 opened Jun 24, 2015 by kevyin
snap not running with -t option of 1 or 2 on Mac OS X
#38 opened Dec 8, 2014 by wm75
ProTip! Updated in the last three days: updated:>2024-12-24.