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Added a task that generates a table of VAFs (as determined by Purple)
for somatic variants.
Added an output stating the pipeline version.
Removed unused breakpointHotspot input.
Removed unused peachTranscriptTsv input.
Removed unused import of snpEff task.
Chunk numbers per input fastq are now calculated based on size.
The total number of chunks can be set using the totalMappingChunks inputs, which defaults to 25.
For various jobs the default runtime attributes have been adjusted
to be more efficient.