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    • Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
      Python
      MIT License
      64209191Updated Dec 25, 2024Dec 25, 2024
    • mcl_imput

      Public
      WDL Analysis Research Pipelines
      WDL
      BSD 3-Clause "New" or "Revised" License
      98003Updated Dec 24, 2024Dec 24, 2024
    • warp

      Public
      WDL Analysis Research Pipelines
      WDL
      BSD 3-Clause "New" or "Revised" License
      98206720Updated Dec 24, 2024Dec 24, 2024
    • Code for the DepMap portal at depmap.org
      Python
      BSD 2-Clause "Simplified" License
      1706Updated Dec 24, 2024Dec 24, 2024
    • C++
      Other
      0000Updated Dec 24, 2024Dec 24, 2024
    • HTML
      Other
      1001Updated Dec 24, 2024Dec 24, 2024
    • R
      Other
      0000Updated Dec 24, 2024Dec 24, 2024
    • Jupyter Notebook
      Other
      0000Updated Dec 24, 2024Dec 24, 2024
    • cromwell

      Public
      Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
      Scala
      BSD 3-Clause "New" or "Revised" License
      3591k74548Updated Dec 23, 2024Dec 23, 2024
    • cms2-work

      Public
      Gather in one place various repos and files related to CMS2.0 work.
      Python
      Apache License 2.0
      3100Updated Dec 23, 2024Dec 23, 2024
    • GitHub Action workflows that can be shared by multiple repositories
      BSD 3-Clause "New" or "Revised" License
      1033Updated Dec 23, 2024Dec 23, 2024
    • Python library for parsing a Linux sudoers file
      Python
      BSD 3-Clause "New" or "Revised" License
      7723Updated Dec 23, 2024Dec 23, 2024
    • glama

      Public
      Genomic long-read analysis modules and applications
      Rust
      BSD 3-Clause "New" or "Revised" License
      0002Updated Dec 23, 2024Dec 23, 2024
    • Workflow for processing cpg0016-jump profiles
      Python
      BSD 3-Clause "New" or "Revised" License
      6262Updated Dec 23, 2024Dec 23, 2024
    • BSD 3-Clause "New" or "Revised" License
      0021Updated Dec 23, 2024Dec 23, 2024
    • ml4h

      Public
      Python
      Other
      231253022Updated Dec 23, 2024Dec 23, 2024
    • juniper

      Public
      Java
      BSD 3-Clause "New" or "Revised" License
      59015Updated Dec 23, 2024Dec 23, 2024
    • rawls

      Public
      Rawls service for DSDE
      Scala
      BSD 3-Clause "New" or "Revised" License
      426011Updated Dec 23, 2024Dec 23, 2024
    • sam

      Public
      workbench identity and access management
      Scala
      BSD 3-Clause "New" or "Revised" License
      1242333Updated Dec 23, 2024Dec 23, 2024
    • Scala
      BSD 3-Clause "New" or "Revised" License
      43106Updated Dec 23, 2024Dec 23, 2024
    • BITS AppEngine Python Package
      Python
      0002Updated Dec 23, 2024Dec 23, 2024
    • sherlock

      Public
      DSP DevOps's deployment source-of-truth service
      Go
      BSD 3-Clause "New" or "Revised" License
      0104Updated Dec 23, 2024Dec 23, 2024
    • Jupyter Notebook
      1000Updated Dec 22, 2024Dec 22, 2024
    • Library and tools to process cell painting images
      TypeScript
      BSD 3-Clause "New" or "Revised" License
      0102Updated Dec 22, 2024Dec 22, 2024
    • DBP_Doe

      Public
      files that will be used to train the 3D Unet on CHTC
      Jupyter Notebook
      0000Updated Dec 22, 2024Dec 22, 2024
    • Monorepo of methods implemented for the Aggregator
      Python
      BSD 3-Clause "New" or "Revised" License
      2107Updated Dec 21, 2024Dec 21, 2024
    • heimdall

      Public
      Shell
      0000Updated Dec 21, 2024Dec 21, 2024
    • Easy batch submission of adhoc jobs onto GCP
      Go
      31319Updated Dec 21, 2024Dec 21, 2024
    • This repository provides a set of Python functions to simplify working with gnomAD Hail Tables. It includes tools for data access, filtering, and analysis.
      Python
      BSD 3-Clause "New" or "Revised" License
      1001Updated Dec 20, 2024Dec 20, 2024
    • Workbench utility libraries
      Scala
      Other
      4903Updated Dec 20, 2024Dec 20, 2024