[DO NOT MERGE] #9045
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[DO NOT MERGE] #9045
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lbergelson
reviewed
Nov 15, 2024
scripts/gatkcondaenv.yml.template
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| - conda-forge::scikit-learn=1.3.2 | ||
| - conda-forge::matplotlib=3.8.2 | ||
| - conda-forge::pandas=2.1.3 | ||
| - conda-forge::tqdm=4.66.1 | ||
| - conda-forge::dill=0.3.7 # used for pickling lambdas in TrainVariantAnnotationsModel | ||
| - conda-forge::biopython=1.84 # used by NVScoreVariants | ||
| - conda-forge::setuptools>=57.0.0 | ||
| - conda-forge::psutil>=5.9.2 | ||
| - conda-forge::protobuf<3.20,>=3.9.2 # Protobuf constraint for TensorFlow compatibility |
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Didn't we get rid of tensorflow?
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No idea. Its in the dependencies for the other project:
# Protobuf 4.0 is incompatible with TF. Force < 3.20 until they unblock upgrade.
# See: http://b/182876485
# See: https://github.com/protocolbuffers/protobuf/issues/9954#issuecomment-1128283911
# See: https://cs.opensource.google/tensorflow/tensorflow/+/master:tensorflow/tools/pip_package/setup.py?q=protobuf
protobuf >= 3.9.2, < 3.20
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Github actions tests reported job failures from actions build 11860232272
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Github actions tests reported job failures from actions build 11860397380
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Github actions tests reported job failures from actions build 11861468072
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Github actions tests reported job failures from actions build 12262986374
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…utor to run it and make sure it gets installed for running correctly
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Testing updates to the GATK conda environment in support of future conda tools.