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Updated README files.#554

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Ian-Erickson wants to merge 66 commits intomasterbroadinstitute/ml4h:masterfrom READMEsbroadinstitute/ml4h:READMEsCopy head branch name to clipboard

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Commits on Sep 29, 2023

• Added README file and image files it references

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• Testing if subscript implementation is correct before using it further.

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• Implemented proper subscript in instances of ML4Hseg and ML4Hreg

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• Changed the title of the README in Deep learning to estimate cardiac magnetic resonance–derived left ventricular mass to be a link.

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• Removed "attachment" tag to images and added .png to Lreg.

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• Added additional line breaks so that the loss functions appeared on their own line.

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• Added line detailing the optimization of the models through the Adam Variant.

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• Added link to Model architectures, trained weights, and more metrics

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• Moved location of model architectures, and other useful data to the first paragraph.

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• Added image comparing the three models and their results.

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• Added Results Section with images from the study.

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• Removed the word "then".

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Commits on Oct 3, 2023

• Changed title of liver fat model into link.

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• Added link to paper in the README of "Deep Learning to Predict Cardiac Magnetic Resonance-Derived Left Ventricular Mass and Hypertrophy from 12-Lead Electrocardiograms"

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• Made the title of "Estimating body fat distribution from silhouette images" a link to the article describing the model.

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• Fixed link in README of "Estimating body fat distribution from silhouette images"

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• Made the citation in the README of mi_feature_selection link to the paper on this model.

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• Made the link in the README of silhouette_IRL go to the article cited.

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• Changed the link in the liver_fat_from_mri_ubk README to the correct article.

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• Did some minor edits in the README of left_ventricular_mass_from_ecg_student_and_mri_teacher.

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Commits on Oct 4, 2023

• Did minor edits on the README of model_zoo/cardiac_mri_derived_left_ventricular_mass

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• Added some info on the LVM-AI model.

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• Changed the image link in Left_Ventricular_Mass....

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• Added image file depicting the training and Test Sets of LVM-AI. Had the image in the README link directly to the added local file.

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• Attempted to decrease the size of the image in left_ventricular_mass_from_ecg_student_and_mri_teacher/README.md

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• Undid previous changes.

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• Updated readme to not use "we" as it does in the report. Also trimmed down the alt text of the images.

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• Further fixed grammar of README

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• Inserted Image of the model's layers into README

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• Changed link in cardiac_mri... README to be in HTML rather than Markdown

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• Removed link in the title from silhouette_mri

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• Added sentence containing link to the paper on the model to several READMEs.

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• Fixed Links to original paper.

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Commits on Oct 13, 2023

• Changed link to original paper in liver_fat README.

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• Removed quotes in ecg_student README for consistency

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• Added Git LFS tracking for images in cardiac_mri_derived...

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• Git removed files

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• Tried to revert changes

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• Merge branch 'READMEs' of https://github.com/broadinstitute/ml4h into READMEs

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• renamed LSeg to Lseg

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• Updated Lseg reference in README

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• Having problems. One of the deleted images won't come back.

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• Merge branch 'READMEs' of https://github.com/broadinstitute/ml4h into READMEs

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• renamed Lseg again.

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• Removed image as it no longer seems to exist.

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• Added git lfs tracking to loss function images

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• Added TrainingAndTestSets.jpg to git lfs

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Commits on Oct 16, 2023

• Adding test image to be removed using git rm.

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• Renamed test image so it's targetable with command.

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• Deleted TestImage.png

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• Attempted to get the loss of ML4Hseg displaying again.

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• Changed alt text of Lreg image

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• Changed the README to use LSeg.png

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• Added lines between text and loss functions.

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• Running git rm on LSeg.png.

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• Adding Lseg back in.

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• Updating Readme to use proper Lseg.png

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• Added git lfs tracking to images in liver_fat...

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• Added lfs tracking to some images not already in .gitattributes.

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Commits on Feb 29, 2024

• Added info and edited example command in tensorize README.

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Commits on Mar 1, 2024

• Moved example command above list of parameters.

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• Turned tensorize_dataflow parameters into nested list.

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• Fixed nested list of parameters of tensorize_dataflow

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• Added gcp_region and logging_level to list of parameteres on the README

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• Added information on the default value for the logging_level parameter.

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• Fixed capitalization of "INFO".

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