enh(wdl): Include minimap2 preset in default output prefix #13
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| name: build-docker | |
| on: | |
| push: | |
| branches: | |
| - "**" | |
| tags: | |
| - "v*" | |
| jobs: | |
| detect-changed: | |
| name: Detect changed docker files | |
| runs-on: ubuntu-latest | |
| outputs: | |
| dockers: ${{ steps.dockers-changed-matrix.outputs.dockers }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Get changed files | |
| id: changed-files | |
| uses: tj-actions/changed-files@v45 | |
| with: | |
| separator: '\n' | |
| files: | | |
| docker/** | |
| - name: Compile list of dockers to rebuild | |
| id: dockers-changed-matrix | |
| env: | |
| ALL_CHANGED_FILES: ${{ steps.changed-files.outputs.all_changed_files }} | |
| run: | | |
| # Build all dockers when publishing a new version tag | |
| if [[ "${{ startsWith(github.ref, 'refs/tags/v') }}" == "true" ]]; then | |
| ls -1 docker/**/Dockerfile | python3 ci/build_matrix_docker_images.py --github-output | |
| else | |
| python3 ci/build_matrix_docker_images.py --github-output <<<"${ALL_CHANGED_FILES}" | |
| fi | |
| build-dockers: | |
| name: Build changed docker images | |
| runs-on: ubuntu-latest | |
| needs: [detect-changed] | |
| strategy: | |
| matrix: | |
| dockers: ${{ fromJSON(needs.detect-changed.outputs.dockers) }} | |
| fail-fast: false | |
| # Add "id-token" with the intended permissions. | |
| permissions: | |
| contents: 'read' | |
| id-token: 'write' | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Authenticate with GCP | |
| id: auth | |
| uses: google-github-actions/auth@v2 | |
| with: | |
| project_id: broad-dsp-lrma | |
| workload_identity_provider: projects/602335226495/locations/global/workloadIdentityPools/github/providers/pangenome-pipelines | |
| service_account: ${{ vars.SERVICE_ACCOUNT }} | |
| token_format: access_token | |
| - name: Login to Artifact Registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: us-central1-docker.pkg.dev | |
| username: oauth2accesstoken | |
| password: ${{ steps.auth.outputs.access_token }} | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| # list of Docker images to use as base name for tags | |
| images: | | |
| ${{ matrix.dockers.img_name }} | |
| # generate Docker tags based on the following events/attributes | |
| tags: | | |
| type=ref,event=branch | |
| type=semver,pattern=v{{version}} | |
| type=semver,pattern=v{{major}}.{{minor}} | |
| type=semver,pattern=v{{major}} | |
| type=sha | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| with: | |
| platforms: linux/amd64, linux/arm64 | |
| - name: Build and push | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: ./${{ matrix.dockers.context }} | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max |