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revert: underlying libraries need upgrade
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dpark01 committed Dec 8, 2023
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -33,7 +33,7 @@ ENV LANG="en_US.UTF-8" LANGUAGE="en_US:en" LC_ALL="en_US.UTF-8"
# Install necessary R dependencies for reconstructR that don't have apt packages
RUN R -e "for (lib in c( 'LaplacesDemon', 'kmer', 'phylogram', 'aphid', 'insect' )) { install.packages(lib, dependencies=TRUE); library(lib, character.only=TRUE) }"
# Rfast in CRAN is broken, install from github
RUN R -e "devtools::install_github('RfastOfficial/Rfast', dependencies=TRUE, upgrade='never'); library(Rfast)"
RUN R -e "devtools::install_github('RfastOfficial/Rfast', dependencies=TRUE); library(Rfast)"

# Install reconstructR R package -- invalidate cache any time github main branch updates
ADD https://api.github.com/repos/broadinstitute/reconstructR/git/refs/heads/main version.json
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