docker build updates #3

dpark01 · 2023-12-12T16:28:18Z

This PR:

fixes certain rare out-of-sync scenarios in the Docker build layers
adds some utility shell scripts for use in WDL (mostly having to do with auto-handling of file compression)
changes the install of reconstructR from install_github (which was always pulling from the main branch on github) to install_local (which will always pull the exact R code that is associated with this particular build / branch / commit)

… not work on out-of-date update data

dpark01 added 7 commits December 12, 2023 10:12

switch to installing reconstructR from files here instead of repo

5f39323

fix typo

e1d81e0

add a cp_and_decompress script

47575f4

add pigz via apt

d775a66

whitespace

5e64745

add multi-file version

4708cec

merge apt-get update and apt-get install build layers -- install will…

de9e8b8

… not work on out-of-date update data

dpark01 merged commit 5f56277 into main Dec 12, 2023
1 of 2 checks passed

dpark01 deleted the docker branch December 12, 2023 17:04

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