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Merge pull request #23 from camilogarciabotero/dev
Refactor ORF main type, update entire writting API and other general changes
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Original file line number | Diff line number | Diff line change |
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@@ -1,27 +1,24 @@ | ||
name = "GeneFinder" | ||
uuid = "2bc6ee46-2158-4f5a-a720-91cb2d7cee64" | ||
authors = ["Camilo García-Botero"] | ||
version = "0.1.0" | ||
version = "0.2.0" | ||
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[deps] | ||
BioMarkovChains = "f861b655-cb5f-42ce-b66a-341b542d4f2c" | ||
BioSequences = "7e6ae17a-c86d-528c-b3b9-7f778a29fe59" | ||
FASTX = "c2308a5c-f048-11e8-3e8a-31650f418d12" | ||
IterTools = "c8e1da08-722c-5040-9ed9-7db0dc04731e" | ||
PrecompileTools = "aea7be01-6a6a-4083-8856-8a6e6704d82a" | ||
StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" | ||
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[compat] | ||
BioMarkovChains = "0.9.0" | ||
BioSequences = "3" | ||
FASTX = "2" | ||
IterTools = "1.4" | ||
PrecompileTools = "1" | ||
StatsBase = "0.34.0" | ||
julia = "1" | ||
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[extras] | ||
Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595" | ||
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" | ||
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[targets] | ||
test = ["Test"] | ||
test = ["Test", "Aqua"] |
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c0105b8
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@JuliaRegistrator register
Release notes:
Breaking changes
Base.getindex
method to better handle ORF enabling:seq[orf]
regardless of the ORF strand.write_*
API is much more stable and its been rewriten to handleIOStreams
andIOBuffers
as well.record_orfs_fna
andrecord_orfs_faa
methods intearact with the FASTX interface.findorfs
andget_*
methods.Aqua.jl
is used for several tests as well.c0105b8
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Registration pull request created: JuliaRegistries/General/98659
Tagging
After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.
This will be done automatically if the Julia TagBot GitHub Action is installed, or can be done manually through the github interface, or via: