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Centre for Computational Medicine at SickKids

The Centre for Computational Medicine (CCM) is a Core Facility within the SickKids Research Institute. Email: ccm dot contact at sickkids dot ca
README.md

The Centre for Computational Medicine (CCM)

The Centre for Computational Medicine (CCM) is a Core Facility within The Hospital for Sick Children (SickKids) Research Institute. Our mission is to provide the scientists and clinicians at SickKids with computational expertise, including high performance computing resources, bioinformatics analysis consulting, and software development. The CCM also acts as a collaboration nexus, working with both biological/medical and computational scientists at SickKids and the University of Toronto to identify appropriate collaborators.

Read more about our projects and our team at ccm.sickkids.ca!

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  1. crg2 crg2 Public

    Research pipeline for exploring clinically relevant genomic variants

    Python 17 5

  2. MetaFusion MetaFusion Public

    Python 8 2

  3. stager stager Public

    Share genomic and exomic datasets and request analyses. Deployed for Care4Rare.

    TypeScript 7

  4. osmp osmp Public

    One-Sided Matching Portal

    TypeScript 6 1

  5. slurm-rest-py slurm-rest-py Public

    OpenAPI client package for the Slurm REST API, automatically generated by OpenAPI-generator.

    Python 1 1

  6. status status Public

    📈 Uptime monitor and status page for Centre for Computational Medicine at SickKids, powered by @upptime

    Markdown

Repositories

Showing 10 of 31 repositories
  • status Public

    📈 Uptime monitor and status page for Centre for Computational Medicine at SickKids, powered by @upptime

    ccmbioinfo/status’s past year of commit activity
    Markdown 0 MIT 0 1 0 Updated Nov 1, 2024
  • status-genomics4rd Public

    📈 Uptime monitor and status page for Centre for Computational Medicine at SickKids, powered by @upptime

    ccmbioinfo/status-genomics4rd’s past year of commit activity
    Markdown 0 MIT 0 0 0 Updated Nov 1, 2024
  • crg2 Public

    Research pipeline for exploring clinically relevant genomic variants

    ccmbioinfo/crg2’s past year of commit activity
    Python 17 Apache-2.0 5 39 8 Updated Oct 30, 2024
  • crg2-pacbio Public
    ccmbioinfo/crg2-pacbio’s past year of commit activity
    Python 0 0 8 1 Updated Oct 30, 2024
  • osmp Public

    One-Sided Matching Portal

    ccmbioinfo/osmp’s past year of commit activity
    TypeScript 6 1 3 10 Updated Oct 29, 2024
  • seqr-cfi Public Forked from broadinstitute/seqr

    web-based analysis tool for rare disease genomics. Forked from Broad Institute, hosted for CFI on G4RD

    ccmbioinfo/seqr-cfi’s past year of commit activity
    Python 0 AGPL-3.0 90 2 2 Updated Oct 24, 2024
  • seqr Public Forked from broadinstitute/seqr

    web-based analysis tool for rare disease genomics. Forked from Broad Institute, hosted for CCM

    ccmbioinfo/seqr’s past year of commit activity
    Perl 0 AGPL-3.0 90 0 0 Updated Oct 15, 2024
  • cre Public

    excel report generation using data from bcbio variant2 germline pipeline

    ccmbioinfo/cre’s past year of commit activity
    Shell 4 MIT 0 0 7 Updated Sep 17, 2024
  • drug-molecules-reps Public

    Testing out models to find better representation of drug-like molecules

    ccmbioinfo/drug-molecules-reps’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 13, 2024
  • drug-screen-models Public

    Runs for trying all diffusion and docking models

    ccmbioinfo/drug-screen-models’s past year of commit activity
    0 0 0 0 Updated Jul 25, 2024
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