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24 Open 11 Closed
24 Open 11 Closed
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Issues list

uniwig output inconsistency: npy and wig
#64 opened Dec 21, 2024 by ClaudeHu
IGD should warn the user that outputs already exist in the current directory enhancement New feature or request igd
#63 opened Dec 20, 2024 by donaldcampbelljr
Uniwig should warn the user that outputs already exist in the current directory enhancement New feature or request uniwig
#62 opened Dec 20, 2024 by donaldcampbelljr
Implement streaming for bed/narrowPeak to bw workflows
#59 opened Dec 18, 2024 by donaldcampbelljr
if associated .bai does not exist, have uniwig create it (using noodles crate) enhancement New feature or request uniwig
#57 opened Dec 16, 2024 by donaldcampbelljr
Accumulation issues during counting likely solved uniwig
#56 opened Dec 12, 2024 by donaldcampbelljr
4
Implement python bindings for uniwig uniwig
#55 opened Dec 12, 2024 by donaldcampbelljr
Implement python bindings for IGD igd
#54 opened Dec 12, 2024 by donaldcampbelljr
Implement scaling in uniwig enhancement New feature or request likely solved uniwig
#53 opened Dec 12, 2024 by donaldcampbelljr
Uniwig: fileheader parameter inconsistent behavior for bed to bw workflow bug Something isn't working uniwig
#52 opened Dec 12, 2024 by donaldcampbelljr
3
IGD Search is returning 0 hits in some test cases bug Something isn't working igd likely solved
#45 opened Nov 4, 2024 by donaldcampbelljr
2
Missing start=setting line in the core file generated by uniwig bug Something isn't working likely solved uniwig
#43 opened Oct 31, 2024 by saanikat
7
Double-tokenizing a RegionSet will result in no tokens
#42 opened Oct 26, 2024 by nleroy917
1
Count based on narrowPeak score uniwig
#34 opened Oct 14, 2024 by donaldcampbelljr
4
Rename uniwig brainstorming
#33 opened Oct 14, 2024 by donaldcampbelljr
Bypass filesystem with uniwig using fifos brainstorming uniwig
#32 opened Oct 10, 2024 by nsheff
1
Add ability for rust uniwig to create output files from input .bam files likely solved uniwig
#30 opened Oct 7, 2024 by donaldcampbelljr
7 of 8 tasks
1
Hierarchical universes and a tokenizer config brainstorming enhancement New feature or request
#25 opened Jun 7, 2024 by nleroy917
Tokenize all the things - genomic omni-model brainstorming
#19 opened May 18, 2024 by nleroy917
Python bindings wont build for linux aarch64 bug Something isn't working help wanted Extra attention is needed likely solved
#18 opened May 15, 2024 by nleroy917
10
Implement an AnnData tokenizer new tool Request to implement a new tool tokenizers Region tokenization
#14 opened Apr 19, 2024 by nleroy917
Inconsistent region numbers question Further information is requested
#10 opened Feb 15, 2024 by gtzheng
4
Implement a soft tokenizer enhancement New feature or request
#7 opened Dec 8, 2023 by nleroy917
@nleroy917
1
Tokenizers should sort universe files before creating region_to_id maps bug Something isn't working
#4 opened Dec 1, 2023 by nleroy917
@nleroy917
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