v3.1.10

Update to use the latest version of cen_vep_config_v1.1.20.json which includes latest ClinVar (20241015) and HGMD 2024.3 annotation resource.

v3.1.9

Update to use the latest version of cen_vep_config_v1.1.19.json which includes latest ClinVar (20240909) annotation resource.

v3.1.8

Updated to use latest CEN VEP config v1.1.18 (fixed file ID for mosaic reports)

v3.1.7

Updated to use latest CEN VEP config v1.1.18

v3.1.6

Updated to use latest CEN VEP config v1.1.17

v3.1.5

Updated to use eggd_artemis v1.5.0

v3.1.4

Updated to use latest versions of:

• SNV reports workflow v2.2.2 (and updated configuration for eggd_athena to start outputting summary text file)
• CEN SNV VEP config v1.1.16

v3.1.3

Changes:

• Fix for the eggd_optimised_filtering filter string to:
  • allow the filter to include variants with a CLNSIG value containing “Pathogenic” (case-sensitive) or “Likely_pathogenic” (case-insensitive)
  • use the correct syntax for case-insensitive pattern matching
• Updated to use the latest CEN VEP config cen_vep_config_v1.1.15.json

Testing page:
https://cuhbioinformatics.atlassian.net/wiki/spaces/DV/pages/3230367754/dias+CEN+config+GRCh37+v3.1.3.json

v3.1.2

Updated to fix human readable description of variant filtering removing the reference to pop max

v3.1.1

Updated to use latest:

• cen_vep_config_v1.1.13.json
• dias_reports_v2.2.1
• dias_cnvreports_v1.2.0
• 240402_g2t.tsv
• 240405_genepanels.tsv

See testing doc for more information:
https://cuhbioinformatics.atlassian.net/wiki/spaces/DV/pages/3165356037/dias+CEN+config+GRCh37+v3.1.1.json