WIP Update (Python) tooling #85

	name: Lint and test

	on: [push, pull_request]

	jobs:
	build-linux:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 5
	matrix:
	python-version: ["3.10"] #, "3.9", "3.10"]

	# Skip `pull_request` runs on local PRs for which `push` runs are already triggered
	if: github.event_name == 'push' \|\| github.event.pull_request.head.repo.full_name != github.repository

	# Service containers to run with `container-job`
	services:
	# Label used to access the service container
	redis:
	# Docker Hub image
	image: redis
	# Set health checks to wait until redis has started
	options: >-
	--health-cmd "redis-cli ping"
	--health-interval 10s
	--health-timeout 5s
	--health-retries 5
	ports:
	# Maps port 6379 on service container to the host
	- 6379:6379

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install LDAP dependencies
	run: sudo apt-get -y install libsasl2-dev libldap2-dev libssl-dev

	- name: Set up Conda environment
	uses: mamba-org/setup-micromamba@v1
	with:
	micromamba-version: "latest"
	environment-file: conda-environment.yml
	cache-environment: true
	post-cleanup: "all"

	- name: Install MXCuBE
	run: "${MAMBA_EXE} run --name mxcubeweb poetry install"

	- name: Linting & Code Quality
	run: "${MAMBA_EXE} run --name mxcubeweb poetry run pre-commit run --all-files"

	- name: Test with pytest
	run: "${MAMBA_EXE} run --name mxcubeweb poetry run pytest"

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