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Save memory by returning a sparse array from extract_binary_masks_from_structural_channel #197

Save memory by returning a sparse array from extract_binary_masks_from_structural_channel

Save memory by returning a sparse array from extract_binary_masks_from_structural_channel #197

Workflow file for this run

name: Linux Conda test
on:
pull_request:
branches:
- main
- dev
push:
branches:
- main
jobs:
build-linux-conda:
runs-on: ubuntu-latest
strategy:
max-parallel: 5
matrix:
python-version: ['3.9', '3.10', '3.11']
fail-fast: false
steps:
- uses: actions/checkout@v4
- name: Set up Conda
uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
python-version: ${{ matrix.python-version }}
environment-file: environment-minimal.yml
activate-environment: caiman
conda-solver: libmamba
- name: Install OS Dependencies
shell: bash -l {0}
run: |
sudo apt-get install libglapi-mesa libegl-mesa0 libegl1 libopengl0 libgl1-mesa-glx
- name: Install Dependencies
shell: bash -l {0}
run: |
conda install pip
pip install -e .
caimanmanager install --inplace
- name: Test
shell: bash -l {0}
run: |
caimanmanager test