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Remove cgranges and fix README
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TedBrookings committed Dec 3, 2024
1 parent 25201bd commit 641a51e
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Showing 6 changed files with 4 additions and 37 deletions.
2 changes: 1 addition & 1 deletion .github/workflows/wheels.yml
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Expand Up @@ -38,7 +38,7 @@ jobs:
steps:
- uses: actions/checkout@v4
with:
submodules: "true"
submodules: "false"

# Used to host cibuildwheel
- uses: actions/setup-python@v4
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4 changes: 0 additions & 4 deletions .gitmodules
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@@ -1,4 +0,0 @@
[submodule "cgranges"]
path = cgranges
url = https://github.com/lh3/cgranges
ignore = dirty
5 changes: 2 additions & 3 deletions README.md
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Expand Up @@ -56,9 +56,9 @@ conda activate pybedlite

# Getting Setup for Development Work

Clone the repository to your local machine. Note that pybedlite >= 0.0.4 includes [cgranges][cgranges-link] as a submodule, so you must use the `--recurse-submodules` option:
Clone the repository to your local machine.
```
git clone --recurse-submodules https://github.com/fulcrumgenomics/pybedlite.git
git clone https://github.com/fulcrumgenomics/pybedlite.git
```

[Poetry][poetry-link] is used to manage the python development environment.
Expand All @@ -85,7 +85,6 @@ export CFLAGS="-stdlib=libc++"

[poetry-link]: https://github.com/python-poetry/poetry
[conda-link]: https://docs.conda.io/en/latest/miniconda.html
[cgranges-link]: https://github.com/lh3/cgranges

## Checking the Build
### Run all checks with:
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26 changes: 0 additions & 26 deletions build.py

This file was deleted.

1 change: 0 additions & 1 deletion cgranges
Submodule cgranges deleted from 2fb5a2
3 changes: 1 addition & 2 deletions pyproject.toml
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Expand Up @@ -25,7 +25,7 @@ classifiers = [
"Topic :: Software Development :: Libraries :: Python Modules",
]
include = ["LICENSE"]
packages = [{ include = "pybedlite" }, { include = "cgranges" }]
packages = [{ include = "pybedlite" }]

[tool.poetry.dependencies]
python = "^3.8.0"
Expand All @@ -45,7 +45,6 @@ pytest-cov = "^4.0.0"
docs = ["sphinx"]

[tool.poetry.build]
script = "build.py"
generate-setup-file = true

[build-system]
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