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Calculate RPM #14
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Calculate RPM #14
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FYI @ljmesi @mjamy
This PR is still a work in progress. Right now it loops through the samplesheet and reads the kraken report into pandas dataframe.
calculate_abundance.pyis being called in a seperate subworkflow (subworkflows/local/load_reports.nf) as decribed: Split the samplesheet check and the parsing of samplesheet in two different modules/subworkflows #12kraken_filtered