Code

155 add serotypefinder module#268

Code

Merged

ryanjameskennedy merged 18 commits intomastergenomic-medicine-sweden/jasen:masterfrom 155-add-serotypefinder-modulegenomic-medicine-sweden/jasen:155-add-serotypefinder-moduleCopy head branch name to clipboardFeb 23, 2024

+174-28

Commits

Commits on Feb 14, 2024

• Add serotypefinder_db as a submodule

  ryanjameskennedy

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  cbf4f29

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• Add serotypefinder module

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Commits on Feb 16, 2024

• Add serotypefinder db setup to Makefile

  ryanjameskennedy

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  ca6a1b8

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• Add serotypefinder arg to prp module

  ryanjameskennedy

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• Add serotypefinder image url to Makefile

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  c80371b

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• Quick fix for serotypefinder module

  ryanjameskennedy

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• Add serotypefinder to workflows

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• Add serotypefinder to configs

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• Update CHANGELOG.md

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• Add --organism arg to amrfinderplus

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Commits on Feb 19, 2024

• Publish ref bwa mapping and add --calling_params arg

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• Fix tb workflow

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Commits on Feb 22, 2024

• Update serotypefinder galaxyproject build number

  ryanjameskennedy

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• Fetch updated serotypefinder image

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• Get serotypefinder_db git hash as version

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  51686b3

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• Update bonsai-prp v0.4.0 to 0.5.0

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  eb502c1

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• Fix formatting error in Makefile

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  8391bc4

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• GA resource limit

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