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Add found_in tag and nf-test to call repeat expansions #1364

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Add found_in tag and nf-test to call repeat expansions

Add found_in tag and nf-test to call repeat expansions #1364

Triggered via pull request October 30, 2024 09:35
@fellen31fellen31
synchronize #445
fellen31:add-found-in-trgt
Status Failure
Total duration 9m 8s
Artifacts –

ci.yml

on: pull_request
Matrix: test
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20 errors and 36 warnings
CALL_REPEAT_EXPANSIONS | docker | NF-24.04.2
Process completed with exit code 1.
CALL_REPEAT_EXPANSIONS | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
CALL_REPEAT_EXPANSIONS | docker | NF-latest-everything
Process completed with exit code 1.
CALL_REPEAT_EXPANSIONS | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
ANNOTATE_SVS | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
ANNOTATE_SVS | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SNV_ANNOTATION | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SNV_ANNOTATION | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
RANK_VARIANTS | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
RANK_VARIANTS | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet_multisample_ont_bam | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet_multisample_ont_bam | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
CALL_SVS | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
CALL_SVS | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet_multisample_bam | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet_multisample_bam | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SHORT_VARIANT_CALLING | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SHORT_VARIANT_CALLING | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
CALL_REPEAT_EXPANSIONS | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
CALL_REPEAT_EXPANSIONS | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
CALL_REPEAT_EXPANSIONS | docker | NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
CALL_REPEAT_EXPANSIONS | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
ANNOTATE_SVS | docker | NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
ANNOTATE_SVS | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
ANNOTATE_SVS | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
ANNOTATE_SVS | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SNV_ANNOTATION | docker | NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
SNV_ANNOTATION | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SNV_ANNOTATION | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
SNV_ANNOTATION | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
RANK_VARIANTS | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
RANK_VARIANTS | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
RANK_VARIANTS | docker | NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
RANK_VARIANTS | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
samplesheet | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet_multisample_ont_bam | docker | NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
samplesheet_multisample_ont_bam | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet_multisample_ont_bam | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
samplesheet_multisample_ont_bam | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
CALL_SVS | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
CALL_SVS | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
CALL_SVS | docker | NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
CALL_SVS | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet | docker | NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
samplesheet | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet_multisample_bam | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
samplesheet_multisample_bam | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet_multisample_bam | docker | NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
samplesheet_multisample_bam | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SHORT_VARIANT_CALLING | docker | NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
SHORT_VARIANT_CALLING | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SHORT_VARIANT_CALLING | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
SHORT_VARIANT_CALLING | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23