Updated tabular data

giffordlabcvr · May 15, 2022 · 0474e08 · 0474e08
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diff --git a/all-vert.names.txt b/all-vert.names.txt
diff --git a/all-vert.names.xlsx b/all-vert.names.xlsx
diff --git a/tabular/eve/parvovirinae/epv-amdo-refseqs-side-data.tsv b/tabular/eve/parvovirinae/epv-amdo-refseqs-side-data.tsv
@@ -1 +1 @@
-sequenceID	locus_numeric_id	source_name	seq_type	num_seqs	assign_clade	assign_subclade	virus_clade_ns	virus_subclade_ns	virus_clade_vp	virus_subclade_vp	intact orf(s)?	expressed?	nearest_upstream_orf	nearest_downstream_orf	minimum_age_ortho	host_group_taxlevel	host_group_name	pubmed_id	insertion_name	insertion_full_name	virus_subfamily	virus_genusamdo.1-ellobius	1	fasta-refseqs-amdo-epv	reference	1	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	NK	NK	NK	NK	NK	Species	Ellobius	30443409	amdo.1-ellobius	amdo.1-ellobius	Parvovirinae	Amdoparvovirusamdo.2-ellobius	2	fasta-refseqs-amdo-epv	reference	1	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	NK	NK	MAFG	MAFG	NK	Species	NK	30443409	amdo.2-ellobius	amdo.2-ellobius	Parvovirinae	Amdoparvovirusap.101-serpentes-UR	101	fasta-refseqs-amdo-epv	reference	4	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	no	NK	R3HDM2	INHBC	NK	Species	NK	30443409	ap.101-serpentes-UR	ap.101-serpentes-UR	Parvovirinae	Amdoparvovirusap.102-hyracoidae	102	fasta-refseqs-amdo-epv	reference	2	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	no	NK	PVT1	CCDC26	NK	Species	NK	30443409	ap.102-procavia	ap.102-procavia	Parvovirinae	Amdoparvovirusap.103-orycteropus	103	fasta-refseqs-amdo-epv	reference	1	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	no	NK	NK	NK	NK	Species	NK	30443409	ap.103-orycteropus	ap.103-orycteropus	Parvovirinae	Amdoparvovirusap.104-sarcophilus	104	fasta-refseqs-amdo-epv	reference	1	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	no	NK	NK	NK	NK	Species	NK	30443409	ap.104-sarcophilus	ap.104-sarcophilus	Parvovirinae	Amdoparvovirusap.105-ptyas	105	fasta-refseqs-amdo-epv	reference	1	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	no	NK	GRM5	GRM5	NK	Species	NK	30443409	ap.105-Pytas	ap.105-Ptyas	Parvovirinae	Amdoparvovirus
+sequenceID	locus_numeric_id	source_name	seq_type	num_seqs	assign_clade	assign_subclade	virus_clade_ns	virus_subclade_ns	virus_clade_vp	virus_subclade_vp	intact orf(s)?	expressed?	nearest_upstream_orf	nearest_downstream_orf	minimum_age_ortho	host_group_taxlevel	host_group_name	pubmed_id	insertion_name	insertion_full_name	virus_subfamily	virus_genusamdo.1-ellobius	1	fasta-refseqs-amdo-epv	reference	1	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	NK	NK	NK	NK	NK	Species	Ellobius	30443409	amdo.1-ellobius	amdo.1-ellobius	Parvovirinae	Amdoparvovirusamdo.2-ellobius	2	fasta-refseqs-amdo-epv	reference	1	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	NK	NK	MAFG	MAFG	NK	Species	NK	30443409	amdo.2-ellobius	amdo.2-ellobius	Parvovirinae	Amdoparvovirusap.101-serpentes-UR	101	fasta-refseqs-amdo-epv	reference	4	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	no	NK	R3HDM2	INHBC	NK	Unranked	Serpentes	30443409	ap.101-serpentes-UR	ap.101-serpentes-UR	Parvovirinae	Amdoparvovirusap.102-hyracoidae	102	fasta-refseqs-amdo-epv	reference	2	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	no	NK	PVT1	CCDC26	NK	Species	Procavia capensis	30443409	ap.102-procavia	ap.102-procavia	Parvovirinae	Amdoparvovirusap.103-orycteropus	103	fasta-refseqs-amdo-epv	reference	1	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	no	NK	NK	NK	NK	Species	Orycteropus afer	30443409	ap.103-orycteropus	ap.103-orycteropus	Parvovirinae	Amdoparvovirusap.104-sarcophilus	104	fasta-refseqs-amdo-epv	reference	1	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	no	NK	NK	NK	NK	Species	Sarcophilus harrisii	30443409	ap.104-sarcophilus	ap.104-sarcophilus	Parvovirinae	Amdoparvovirusap.105-ptyas	105	fasta-refseqs-amdo-epv	reference	1	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	Amdoparvovirus	no	NK	GRM5	GRM5	NK	Species	Pytas	30443409	ap.105-Ptyas	ap.105-Pytas	Parvovirinae	Amdoparvovirus

diff --git a/tabular/eve/parvovirinae/epv-amdo-refseqs-side-data.xlsx b/tabular/eve/parvovirinae/epv-amdo-refseqs-side-data.xlsx