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Support Baysor>=7.0.0 #127

Merged
merged 6 commits into from
Sep 25, 2024
Merged

Support Baysor>=7.0.0 #127

merged 6 commits into from
Sep 25, 2024

Commits on Sep 24, 2024

  1. Fix compatibility with latest version of Baysor 

    Latest version of Baysor outputs either `segmentation_polygons2D.json` or
`segmentation_polygons3D.json` depending on input data.
This very basic fix would reestablish compatibility, in case users aren't
running both 2D and 3D and outputting results in same folder
    @lguerard
    lguerard committed Sep 24, 2024
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  2. Fix issue with WindowPath and glob

    @lguerard
    lguerard committed Sep 24, 2024
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  3. Revert last commit and update API documentation 

    Some Baysor options were removed and the output format of the polygons needs to
be changed to fit with the next steps of the pipeline.
    @lguerard
    lguerard committed Sep 24, 2024
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  4. Fix parsing of Cell number from loom file

    @lguerard
    lguerard committed Sep 24, 2024
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Commits on Sep 25, 2024

  1. Merge branch 'dev' of https://github.com/lguerard/sopa into lguerard-dev

    @quentinblampey
    quentinblampey committed Sep 25, 2024
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  2. check whether the cell ids are string or int

    @quentinblampey
    quentinblampey committed Sep 25, 2024
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