chore: dev to master #113
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chore: dev to master #113
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fix: remove conda from picard.smk
feat: update snakemake version, allow range up to version 8
docs: Rtd
Removed superfluous line
Added software description.
Indentation fixed
ändra formateringen
feat: add vertifybamid2
) * feat: update samtools.smk and remove design_bed as a default extra * Update workflow/rules/samtools.smk Co-authored-by: jonca79 <[email protected]> * feat: add schemas for samtools rules * Update rules.schema.yaml --------- Co-authored-by: jonca79 <[email protected]>
padraicc
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Smeds,
jonca79,
marrip,
elleira,
cl2014git and
zezzipa
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jonca79
approved these changes
Feb 12, 2024
jonca79
approved these changes
Feb 21, 2024
elleira
reviewed
Apr 17, 2024
docs/images/qc.dot
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Verifybamid is not included in the rulegraph
| | [samtools](http://www.htslib.org/doc/samtools-stats.html) | _ _ | Alignment statistics | | ||
| | [peddy](http://www.htslib.org/doc/samtools-stats.html) | vcf | Sex and relatedness checks | | ||
| | [multiQC](https://github.com/ewels/MultiQC) | QC-files | Summary html-report | | ||
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Addressing this and all the other readthedocs issues in #117
We can pull that in to fix the above
* docs: add files to build rtd and test the build * docs: update module input files in intro
elleira
approved these changes
Apr 17, 2024
padraicc
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Apr 18, 2024
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This PR:
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Added: for new features.
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CHANGELOG.mdis updatedREADME.mdis up to date