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chore: dev to master#113

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padraicc merged 22 commits intomasterhydra-genetics/qc:masterfrom develophydra-genetics/qc:developCopy head branch name to clipboardApr 17, 2024

+33,488-154

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Commits on May 3, 2023

• fix: remove conda from picard.smk

  elleira

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Commits on May 4, 2023

• Merge pull request #101 from hydra-genetics/fix_conda

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  Smeds

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Commits on May 12, 2023

• feat: update snakemake version, allow range up to version 8

  Smeds

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Commits on May 15, 2023

• Merge pull request #105 from hydra-genetics/Smeds-patch-1

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  jonca79

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Commits on Jul 7, 2023

• fix: add bai file to picard rules that needs it

  jonca79

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• docs: added rtd for all rules up to picard

  jonca79

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Commits on Oct 5, 2023

• docs: update plugin version and added override value for multiqc input

  Smeds

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• Merge pull request #107 from hydra-genetics/rtd

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  jonca79

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Commits on Oct 6, 2023

• feat: add vertifybamid2

  

  magdalenazz

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  MagdalenaZZ

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• fix: Update to make outputs temporary

  MagdalenaZZ

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• fix: excluded verifybamid from integration testing

  MagdalenaZZ

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• docs: Updated rules.schema.yaml with additional details on inputs and outputs

  MagdalenaZZ

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• Style: linted Snakefile and common.smk with snkfmt

  MagdalenaZZ

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Commits on Oct 9, 2023

• Update softwares.md

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• Update softwares.md

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  MagdalenaZZ

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• Update rules.schema.yaml

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  MagdalenaZZ

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• docs: Update softwares.md

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  MagdalenaZZ

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• Merge pull request #108 from hydra-genetics/verifybamid

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  MagdalenaZZ

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Commits on Dec 5, 2023

• feat: update samtools.smk and remove design_bed as a default extra (#112)

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  padraicc

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  jonca79

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Commits on Feb 12, 2024

• fix: Update requirements.txt (#114)

  padraicc

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Commits on Mar 28, 2024

• docs: update rule graph (#116)

  padraicc

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Commits on Apr 17, 2024

• docs: add files to build rtd and test the build (#117)

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  padraicc

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