docs: add files to build rtd and test the build #117
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padraicc
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Smeds,
jonca79,
marrip,
elleira,
cl2014git and
zezzipa
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jonca79
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Apr 17, 2024
padraicc
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Apr 17, 2024
* fix: remove conda from picard.smk * feat: update snakemake version, allow range up to version 8 * fix: add bai file to picard rules that needs it * docs: added rtd for all rules up to picard * docs: update plugin version and added override value for multiqc input * feat: add vertifybamid2 * fix: Update to make outputs temporary * fix: excluded verifybamid from integration testing * docs: Updated rules.schema.yaml with additional details on inputs and outputs * Style: linted Snakefile and common.smk with snkfmt * Update softwares.md Removed superfluous line * Update softwares.md Added software description. * Update rules.schema.yaml Indentation fixed * docs: Update softwares.md ändra formateringen * feat: update samtools.smk and remove design_bed as a default extra (#112) * feat: update samtools.smk and remove design_bed as a default extra * Update workflow/rules/samtools.smk Co-authored-by: jonca79 <[email protected]> * feat: add schemas for samtools rules * Update rules.schema.yaml --------- Co-authored-by: jonca79 <[email protected]> * fix: Update requirements.txt (#114) * docs: update rule graph (#116) * docs: add files to build rtd and test the build (#117) * docs: add files to build rtd and test the build * docs: update module input files in intro --------- Co-authored-by: Arielle R Munters <[email protected]> Co-authored-by: Patrik Smeds <[email protected]> Co-authored-by: jonca79 <[email protected]> Co-authored-by: jonca79 <[email protected]> Co-authored-by: magdalenazz <[email protected]> Co-authored-by: MagdalenaZZ <[email protected]>
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CHANGELOG.mdis updatedREADME.mdis up to date