Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

BDA #310

Merged
merged 309 commits into from
Feb 7, 2024
Merged

BDA #310

merged 309 commits into from
Feb 7, 2024
This pull request is big! We’re only showing the most recent 250 commits.

Commits on Jun 27, 2023

  1. function autocorr plot added

    @michael-gemmell
    michael-gemmell committed Jun 27, 2023
    Configuration menu
    Copy the full SHA
    59c8316 View commit details
    Browse the repository at this point in the history

  2. ion density added to kinetic profiles saved

    @michael-gemmell
    michael-gemmell committed Jun 27, 2023
    Configuration menu
    Copy the full SHA
    b2dee2d View commit details
    Browse the repository at this point in the history

  3. inital commit of abstract workflow and example of usage

    @michael-gemmell
    michael-gemmell committed Jun 27, 2023
    Configuration menu
    Copy the full SHA
    8eee24e View commit details
    Browse the repository at this point in the history

  4. doc strings

    @michael-gemmell
    michael-gemmell committed Jun 27, 2023
    Configuration menu
    Copy the full SHA
    408b619 View commit details
    Browse the repository at this point in the history

  5. renaming workflow

    @michael-gemmell
    michael-gemmell committed Jun 27, 2023
    Configuration menu
    Copy the full SHA
    de237dd View commit details
    Browse the repository at this point in the history

Commits on Jun 30, 2023

  1. Ti_ref as default

    @michael-gemmell
    michael-gemmell committed Jun 30, 2023
    Configuration menu
    Copy the full SHA
    06c0746 View commit details
    Browse the repository at this point in the history

  2. abstract methods added

    @michael-gemmell
    michael-gemmell committed Jun 30, 2023
    Configuration menu
    Copy the full SHA
    5435769 View commit details
    Browse the repository at this point in the history

Commits on Jul 4, 2023

  1. Changed to new MDSPlus structure

    @michael-gemmell
    michael-gemmell committed Jul 4, 2023
    Configuration menu
    Copy the full SHA
    ee3a62e View commit details
    Browse the repository at this point in the history

  2. Adding default methods

    @michael-gemmell
    michael-gemmell committed Jul 4, 2023
    Configuration menu
    Copy the full SHA
    a8ca5fa View commit details
    Browse the repository at this point in the history

  3. moved sampling to it's own function in abstract class

    @michael-gemmell
    michael-gemmell committed Jul 4, 2023
    Configuration menu
    Copy the full SHA
    6f1e330 View commit details
    Browse the repository at this point in the history

  4. moved sampling to it's own function in abstract class

    @michael-gemmell
    michael-gemmell committed Jul 4, 2023
    Configuration menu
    Copy the full SHA
    dd3abdf View commit details
    Browse the repository at this point in the history

  5. renamed abstract class to AbstractBayesWorkflow

    @michael-gemmell
    michael-gemmell committed Jul 4, 2023
    Configuration menu
    Copy the full SHA
    6f9d4a8 View commit details
    Browse the repository at this point in the history

  6. comments

    @michael-gemmell
    michael-gemmell committed Jul 4, 2023
    Configuration menu
    Copy the full SHA
    55e2f8f View commit details
    Browse the repository at this point in the history

  7. added high density sampling as method

    @michael-gemmell
    michael-gemmell committed Jul 4, 2023
    Configuration menu
    Copy the full SHA
    d3bf315 View commit details
    Browse the repository at this point in the history

  8. added attributes to __init__

    @michael-gemmell
    michael-gemmell committed Jul 4, 2023
    Configuration menu
    Copy the full SHA
    430a44b View commit details
    Browse the repository at this point in the history

  9. error handling __init__

    @michael-gemmell
    michael-gemmell committed Jul 4, 2023
    Configuration menu
    Copy the full SHA
    d633ae5 View commit details
    Browse the repository at this point in the history

  10. error handling __init__

    @michael-gemmell
    michael-gemmell committed Jul 4, 2023
    Configuration menu
    Copy the full SHA
    35b64cf View commit details
    Browse the repository at this point in the history

  11. moved read data to abstract class

    @michael-gemmell
    michael-gemmell committed Jul 4, 2023
    Configuration menu
    Copy the full SHA
    633b36c View commit details
    Browse the repository at this point in the history

Commits on Jul 7, 2023

  1. initial commit

    @michael-gemmell
    michael-gemmell committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    2ce1c58 View commit details
    Browse the repository at this point in the history

  2. kwargs added

    @michael-gemmell
    michael-gemmell committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    08cf081 View commit details
    Browse the repository at this point in the history

  3. xrcs wavelength units corrected

    @michael-gemmell
    michael-gemmell committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    82eb00b View commit details
    Browse the repository at this point in the history

  4. background to int

    @michael-gemmell
    michael-gemmell committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    666387b View commit details
    Browse the repository at this point in the history

Commits on Jul 11, 2023

  1. stash

    @michael-gemmell
    michael-gemmell committed Jul 11, 2023
    Configuration menu
    Copy the full SHA
    3690efb View commit details
    Browse the repository at this point in the history

  2. renamed impurities

    @michael-gemmell
    michael-gemmell committed Jul 11, 2023
    Configuration menu
    Copy the full SHA
    3c23661 View commit details
    Browse the repository at this point in the history

Commits on Jul 12, 2023

  1. stashing

    @michael-gemmell
    michael-gemmell committed Jul 12, 2023
    Configuration menu
    Copy the full SHA
    bf3bfb9 View commit details
    Browse the repository at this point in the history

Commits on Jul 13, 2023

  1. stashing

    @michael-gemmell
    michael-gemmell committed Jul 13, 2023
    Configuration menu
    Copy the full SHA
    fbfafe5 View commit details
    Browse the repository at this point in the history

Commits on Jul 14, 2023

  1. stashing

    @michael-gemmell
    michael-gemmell committed Jul 14, 2023
    Configuration menu
    Copy the full SHA
    9f62a78 View commit details
    Browse the repository at this point in the history

  2. fixing key names

    @michael-gemmell
    michael-gemmell committed Jul 14, 2023
    Configuration menu
    Copy the full SHA
    3828c49 View commit details
    Browse the repository at this point in the history

  3. updating and testing example

    @michael-gemmell
    michael-gemmell committed Jul 14, 2023
    Configuration menu
    Copy the full SHA
    310a440 View commit details
    Browse the repository at this point in the history

  4. added background as attribute of helike model

    @michael-gemmell
    michael-gemmell committed Jul 14, 2023
    Configuration menu
    Copy the full SHA
    d8f9be5 View commit details
    Browse the repository at this point in the history

  5. fixed phantom methods

    @michael-gemmell
    michael-gemmell committed Jul 14, 2023
    Configuration menu
    Copy the full SHA
    1f0a0f9 View commit details
    Browse the repository at this point in the history

  6. rearranged methods

    @michael-gemmell
    michael-gemmell committed Jul 14, 2023
    Configuration menu
    Copy the full SHA
    7623a54 View commit details
    Browse the repository at this point in the history

Commits on Aug 2, 2023

  1. moved background to call kwarg

    @michael-gemmell
    michael-gemmell committed Aug 2, 2023
    Configuration menu
    Copy the full SHA
    b3b7a26 View commit details
    Browse the repository at this point in the history

  2. params and kwargs now are given as model_{var} and model prefix is re… 

    …moved before model call
    @michael-gemmell
    michael-gemmell committed Aug 2, 2023
    Configuration menu
    Copy the full SHA
    4a7e022 View commit details
    Browse the repository at this point in the history

  3. adding _phantom_data and _exp_data abstract methods

    @michael-gemmell
    michael-gemmell committed Aug 2, 2023
    Configuration menu
    Copy the full SHA
    e78f638 View commit details
    Browse the repository at this point in the history

  4. renaming to BayesWorkflowExample

    @michael-gemmell
    michael-gemmell committed Aug 2, 2023
    Configuration menu
    Copy the full SHA
    82d6fee View commit details
    Browse the repository at this point in the history

  5. initial commit

    @michael-gemmell
    michael-gemmell committed Aug 2, 2023
    Configuration menu
    Copy the full SHA
    2c1c48a View commit details
    Browse the repository at this point in the history

  6. renamed phantom_params to profile_params

    @michael-gemmell
    michael-gemmell committed Aug 2, 2023
    Configuration menu
    Copy the full SHA
    c7a2ca5 View commit details
    Browse the repository at this point in the history

  7. renamed bayesopt -> bayesmodel

    @michael-gemmell
    michael-gemmell committed Aug 2, 2023
    Configuration menu
    Copy the full SHA
    db25e70 View commit details
    Browse the repository at this point in the history

  8. renamed bayesopt -> bayesmodel

    @michael-gemmell
    michael-gemmell committed Aug 2, 2023
    Configuration menu
    Copy the full SHA
    b1c5bd3 View commit details
    Browse the repository at this point in the history

  9. moved start point sampling to its own method _sample_start_points

    @michael-gemmell
    michael-gemmell committed Aug 2, 2023
    Configuration menu
    Copy the full SHA
    f78ce64 View commit details
    Browse the repository at this point in the history

  10. fixed variable name

    @michael-gemmell
    michael-gemmell committed Aug 2, 2023
    Configuration menu
    Copy the full SHA
    c3a418b View commit details
    Browse the repository at this point in the history

  11. fixed bug with start_points being overwritten

    @michael-gemmell
    michael-gemmell committed Aug 2, 2023
    Configuration menu
    Copy the full SHA
    196eb60 View commit details
    Browse the repository at this point in the history

Commits on Aug 8, 2023

  1. removed workflow_dev

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    31542b0 View commit details
    Browse the repository at this point in the history

  2. moving equilibrium to workflow object

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    cc218b4 View commit details
    Browse the repository at this point in the history

  3. when reading raw data save transforms to their own attribute

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    9cb0266 View commit details
    Browse the repository at this point in the history

  4. transforms saved to workflow class

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    68c1872 View commit details
    Browse the repository at this point in the history

  5. fixed name

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    f0f561f View commit details
    Browse the repository at this point in the history

  6. renamed example transform

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    3b2eaee View commit details
    Browse the repository at this point in the history

  7. made example los function

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    ae200d3 View commit details
    Browse the repository at this point in the history

  8. minor name fix

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    3d9d540 View commit details
    Browse the repository at this point in the history

  9. made read_test_data function

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    cd04fb1 View commit details
    Browse the repository at this point in the history

  10. made example los function

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    dfdd791 View commit details
    Browse the repository at this point in the history

  11. minor type

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    4c6c1c2 View commit details
    Browse the repository at this point in the history

  12. added reader to read_test_data method

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    0ce85fa View commit details
    Browse the repository at this point in the history

  13. fixed copying workflow object states

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    fa5ac44 View commit details
    Browse the repository at this point in the history

  14. updated example to work with assign_profiles

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    7d343a4 View commit details
    Browse the repository at this point in the history

  15. can now run with pulse = None and synthetic transforms/equilibrium

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    489d14a View commit details
    Browse the repository at this point in the history

  16. formatting

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    e04fe9b View commit details
    Browse the repository at this point in the history

  17. refactoring names

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    6fcff75 View commit details
    Browse the repository at this point in the history

  18. deleted old bayes_models tests

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    eba8ca7 View commit details
    Browse the repository at this point in the history

  19. reformatted _build_bckc for readability

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    b6ece95 View commit details
    Browse the repository at this point in the history

  20. moved percentage error to class attribute

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    2bd93bf View commit details
    Browse the repository at this point in the history

  21. fixing init percent error

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    e46ac8a View commit details
    Browse the repository at this point in the history

  22. black formatting

    @michael-gemmell
    michael-gemmell committed Aug 8, 2023
    Configuration menu
    Copy the full SHA
    cc0aafd View commit details
    Browse the repository at this point in the history

Commits on Aug 10, 2023

  1. renamed kin_prof -> plasma_profiles

    @michael-gemmell
    michael-gemmell committed Aug 10, 2023
    Configuration menu
    Copy the full SHA
    acc50b5 View commit details
    Browse the repository at this point in the history

  2. refactored window handling

    @michael-gemmell
    michael-gemmell committed Aug 10, 2023
    Configuration menu
    Copy the full SHA
    223a526 View commit details
    Browse the repository at this point in the history

  3. replaced doppler_broaden with physics.ev_doppler

    @michael-gemmell
    michael-gemmell committed Aug 10, 2023
    Configuration menu
    Copy the full SHA
    c9333ae View commit details
    Browse the repository at this point in the history

  4. removed methods from __init__

    @michael-gemmell
    michael-gemmell committed Aug 10, 2023
    Configuration menu
    Copy the full SHA
    80bc391 View commit details
    Browse the repository at this point in the history

Commits on Aug 11, 2023

  1. stashing

    @michael-gemmell
    michael-gemmell committed Aug 11, 2023
    Configuration menu
    Copy the full SHA
    3f5c089 View commit details
    Browse the repository at this point in the history

Commits on Aug 15, 2023

  1. setup_plasma now takes kwargs

    @michael-gemmell
    michael-gemmell committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    766825a View commit details
    Browse the repository at this point in the history

  2. adding plasma to models now happens in setup_opt_data

    @michael-gemmell
    michael-gemmell committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    cb93ae8 View commit details
    Browse the repository at this point in the history

  3. workflow broken up into methods

    @michael-gemmell
    michael-gemmell committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    cf1c127 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'st40' into michaelgemmell/bayes_workflow

    @michael-gemmell
    michael-gemmell committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    3019e45 View commit details
    Browse the repository at this point in the history

  5. removed redundant kwargs

    @michael-gemmell
    michael-gemmell committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    260a515 View commit details
    Browse the repository at this point in the history

  6. fixed non_plasma call option

    @michael-gemmell
    michael-gemmell committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    0821b9d View commit details
    Browse the repository at this point in the history

  7. fixed plasma_initialisation

    @michael-gemmell
    michael-gemmell committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    78800c6 View commit details
    Browse the repository at this point in the history

  8. fixing violin plotting

    @michael-gemmell
    michael-gemmell committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    62d6727 View commit details
    Browse the repository at this point in the history

  9. units for xrcs.spectra.wavelength fixed

    @michael-gemmell
    michael-gemmell committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    98190dd View commit details
    Browse the repository at this point in the history

Commits on Aug 17, 2023

  1. nchannels added to example_los

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    f732da0 View commit details
    Browse the repository at this point in the history

  2. adding print message for fake data reading

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    ec1c9ca View commit details
    Browse the repository at this point in the history

  3. adjusting example los

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    b0fac37 View commit details
    Browse the repository at this point in the history

  4. bckc method not printing spectra/fit not available everytime

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    03d68c7 View commit details
    Browse the repository at this point in the history

  5. adjusting priors

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    72e6e7e View commit details
    Browse the repository at this point in the history

  6. moved kwargs to sample function

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    d5ebe08 View commit details
    Browse the repository at this point in the history

  7. nsamples kwarg added to sample_from_high_density_region

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    056b7f5 View commit details
    Browse the repository at this point in the history

  8. mocked bda_tree module

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    e1b35c5 View commit details
    Browse the repository at this point in the history

  9. fixed import

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    3733bc6 View commit details
    Browse the repository at this point in the history

  10. fixed import

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    b0f3fae View commit details
    Browse the repository at this point in the history

  11. black formatting

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    ad9400a View commit details
    Browse the repository at this point in the history

  12. black formatting

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    f0a1d65 View commit details
    Browse the repository at this point in the history

  13. fixed where mocked module is imported

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    3b1dcd8 View commit details
    Browse the repository at this point in the history

  14. black formatting

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    b8b6cee View commit details
    Browse the repository at this point in the history

  15. mocking bda_tree import

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    d3e4e5c View commit details
    Browse the repository at this point in the history

  16. precommit

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    a7ec4cd View commit details
    Browse the repository at this point in the history

  17. precommit

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    b1babc4 View commit details
    Browse the repository at this point in the history

  18. moving read_data tvector to kwargs

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    8e2f2d8 View commit details
    Browse the repository at this point in the history

  19. precommit formatting

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    519c4ed View commit details
    Browse the repository at this point in the history

  20. precommit formatting

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    f7623ce View commit details
    Browse the repository at this point in the history

  21. precommit types

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    67bd35c View commit details
    Browse the repository at this point in the history

  22. precommit types

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    d1afc87 View commit details
    Browse the repository at this point in the history

  23. precommit types

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    1f38f27 View commit details
    Browse the repository at this point in the history

  24. precommit types

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    c555f6b View commit details
    Browse the repository at this point in the history

  25. precommit types

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    b5d5840 View commit details
    Browse the repository at this point in the history

  26. precommit types

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    9d12492 View commit details
    Browse the repository at this point in the history

  27. precommit types

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    15c4aac View commit details
    Browse the repository at this point in the history

  28. moving kwargs/args around

    @michael-gemmell
    michael-gemmell committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    4362cd5 View commit details
    Browse the repository at this point in the history

Commits on Aug 22, 2023

  1. adding mode/run to main call

    @michael-gemmell
    michael-gemmell committed Aug 22, 2023
    Configuration menu
    Copy the full SHA
    37fff66 View commit details
    Browse the repository at this point in the history

  2. pressure/stored energy are now saved/written

    @michael-gemmell
    michael-gemmell committed Aug 22, 2023
    Configuration menu
    Copy the full SHA
    d5b5eb5 View commit details
    Browse the repository at this point in the history

  3. removing for loops from pressure/ion density/zeff calculations

    @michael-gemmell
    michael-gemmell committed Aug 22, 2023
    Configuration menu
    Copy the full SHA
    07c6895 View commit details
    Browse the repository at this point in the history

  4. removing for loops from ion density calculations

    @michael-gemmell
    michael-gemmell committed Aug 22, 2023
    Configuration menu
    Copy the full SHA
    845954b View commit details
    Browse the repository at this point in the history

  5. defaulting to using cached calculations -> factor 2 speed upgit add i… 

    …ndica/models/plasma.py
    @michael-gemmell
    michael-gemmell committed Aug 22, 2023
    Configuration menu
    Copy the full SHA
    83ede9e View commit details
    Browse the repository at this point in the history

  6. example transform moved to own function

    @michael-gemmell
    michael-gemmell committed Aug 22, 2023
    Configuration menu
    Copy the full SHA
    ca5900c View commit details
    Browse the repository at this point in the history

  7. t = time_to_calculate and bckc don't print if chi2 not included

    @michael-gemmell
    michael-gemmell committed Aug 22, 2023
    Configuration menu
    Copy the full SHA
    741808e View commit details
    Browse the repository at this point in the history

Commits on Aug 23, 2023

  1. Thompson Scattering added

    @michael-gemmell
    michael-gemmell committed Aug 23, 2023
    Configuration menu
    Copy the full SHA
    cf3b01f View commit details
    Browse the repository at this point in the history

  2. error checking for missing data

    @michael-gemmell
    michael-gemmell committed Aug 23, 2023
    Configuration menu
    Copy the full SHA
    e4fe2bc View commit details
    Browse the repository at this point in the history

Commits on Aug 24, 2023

  1. in _make_spectra moved sorting wavelengths to end of method and fixed… 

    … wavelength co-ordinates that were added incorrectly
    @michael-gemmell
    michael-gemmell committed Aug 24, 2023
    Configuration menu
    Copy the full SHA
    b316163 View commit details
    Browse the repository at this point in the history

  2. integrating spectra was removing nans so added them back post integra… 

    …tion
    @michael-gemmell
    michael-gemmell committed Aug 24, 2023
    Configuration menu
    Copy the full SHA
    bc56b39 View commit details
    Browse the repository at this point in the history

  3. pixel offset added as __call__ option

    @michael-gemmell
    michael-gemmell committed Aug 24, 2023
    Configuration menu
    Copy the full SHA
    5368990 View commit details
    Browse the repository at this point in the history

  4. time vector in INPUTS added

    @michael-gemmell
    michael-gemmell committed Aug 24, 2023
    Configuration menu
    Copy the full SHA
    82208ca View commit details
    Browse the repository at this point in the history

Commits on Sep 4, 2023

  1. adjusting calibration factor

    @michael-gemmell
    michael-gemmell committed Sep 4, 2023
    Configuration menu
    Copy the full SHA
    da94202 View commit details
    Browse the repository at this point in the history

  2. max-min ranges now 0.5-99.5

    @michael-gemmell
    michael-gemmell committed Sep 4, 2023
    Configuration menu
    Copy the full SHA
    0abbaaa View commit details
    Browse the repository at this point in the history

  3. high_density_sampling now uses 3 best points

    @michael-gemmell
    michael-gemmell committed Sep 4, 2023
    Configuration menu
    Copy the full SHA
    6114dc4 View commit details
    Browse the repository at this point in the history

  4. Gelmin-Rubin diagnostic added to optimisation node

    @michael-gemmell
    michael-gemmell committed Sep 4, 2023
    Configuration menu
    Copy the full SHA
    d210b28 View commit details
    Browse the repository at this point in the history

  5. Gelman-Rubin diagnostic added to tree

    @michael-gemmell
    michael-gemmell committed Sep 4, 2023
    Configuration menu
    Copy the full SHA
    7e7d02d View commit details
    Browse the repository at this point in the history

  6. stashing

    @michael-gemmell
    michael-gemmell committed Sep 4, 2023
    Configuration menu
    Copy the full SHA
    e3c2abf View commit details
    Browse the repository at this point in the history

Commits on Sep 6, 2023

  1. now accepts variable number of input parameters and fills missing val… 

    …ues with default settings
    @michael-gemmell
    michael-gemmell committed Sep 6, 2023
    Configuration menu
    Copy the full SHA
    cb0df2a View commit details
    Browse the repository at this point in the history

  2. priors now more constrained for wped/wcenter

    @michael-gemmell
    michael-gemmell committed Sep 6, 2023
    Configuration menu
    Copy the full SHA
    b48ea95 View commit details
    Browse the repository at this point in the history

  3. priors now more constrained for wped/wcenter

    @michael-gemmell
    michael-gemmell committed Sep 6, 2023
    Configuration menu
    Copy the full SHA
    90c38fb View commit details
    Browse the repository at this point in the history

Commits on Sep 11, 2023

  1. fast particles from ASTRA included

    @michael-gemmell
    michael-gemmell committed Sep 11, 2023
    Configuration menu
    Copy the full SHA
    51ee0d9 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'st40' into michaelgemmell/bayes_workflow

    @marcosertoli
    marcosertoli authored Sep 11, 2023
    Configuration menu
    Copy the full SHA
    3979531 View commit details
    Browse the repository at this point in the history

Commits on Sep 12, 2023

  1. ASTRA options added to BDA

    @michael-gemmell
    michael-gemmell committed Sep 12, 2023
    Configuration menu
    Copy the full SHA
    b9d09e2 View commit details
    Browse the repository at this point in the history

  2. chers added

    @michael-gemmell
    michael-gemmell committed Sep 12, 2023
    Configuration menu
    Copy the full SHA
    4089d41 View commit details
    Browse the repository at this point in the history

  3. chers added

    @michael-gemmell
    michael-gemmell committed Sep 12, 2023
    Configuration menu
    Copy the full SHA
    e74ed9a View commit details
    Browse the repository at this point in the history

Commits on Sep 13, 2023

  1. Extra ASTRA options implemented

    @michael-gemmell
    michael-gemmell committed Sep 13, 2023
    Configuration menu
    Copy the full SHA
    f4bc980 View commit details
    Browse the repository at this point in the history

  2. prior for ne.wped increased to 30

    @michael-gemmell
    michael-gemmell committed Sep 13, 2023
    Configuration menu
    Copy the full SHA
    875293c View commit details
    Browse the repository at this point in the history

  3. not automatically adding equil to transforms now

    @michael-gemmell
    michael-gemmell committed Sep 13, 2023
    Configuration menu
    Copy the full SHA
    6545540 View commit details
    Browse the repository at this point in the history

Commits on Sep 21, 2023

  1. Fixed plotting for multiple time points

    @michael-gemmell
    michael-gemmell committed Sep 21, 2023
    Configuration menu
    Copy the full SHA
    fd859b5 View commit details
    Browse the repository at this point in the history

  2. save_pickle now takes dictionary as argument

    @michael-gemmell
    michael-gemmell committed Sep 21, 2023
    Configuration menu
    Copy the full SHA
    01ea6b4 View commit details
    Browse the repository at this point in the history

  3. stashing

    @michael-gemmell
    michael-gemmell committed Sep 21, 2023
    Configuration menu
    Copy the full SHA
    ada6ce0 View commit details
    Browse the repository at this point in the history

  4. stashing

    @michael-gemmell
    michael-gemmell committed Sep 21, 2023
    Configuration menu
    Copy the full SHA
    5609b93 View commit details
    Browse the repository at this point in the history

  5. merging

    @michael-gemmell
    michael-gemmell committed Sep 21, 2023
    Configuration menu
    Copy the full SHA
    1e18dc3 View commit details
    Browse the repository at this point in the history

  6. Rough batch script for running BDA

    @michael-gemmell
    michael-gemmell committed Sep 21, 2023
    Configuration menu
    Copy the full SHA
    ecdbb65 View commit details
    Browse the repository at this point in the history

  7. merging

    @michael-gemmell
    michael-gemmell committed Sep 21, 2023
    Configuration menu
    Copy the full SHA
    9cd5d26 View commit details
    Browse the repository at this point in the history

Commits on Oct 2, 2023

  1. sampler stopping condition based on moments added

    @michael-gemmell
    michael-gemmell committed Oct 2, 2023
    Configuration menu
    Copy the full SHA
    cf736c7 View commit details
    Browse the repository at this point in the history

Commits on Oct 12, 2023

  1. cleaned up and added virtual observations

    @michael-gemmell
    michael-gemmell committed Oct 12, 2023
    Configuration menu
    Copy the full SHA
    4730dc8 View commit details
    Browse the repository at this point in the history

  2. normalising TS profiles before fitting

    @michael-gemmell
    michael-gemmell committed Oct 12, 2023
    Configuration menu
    Copy the full SHA
    ec77188 View commit details
    Browse the repository at this point in the history

  3. background can be class attribute or call argument

    @michael-gemmell
    michael-gemmell committed Oct 12, 2023
    Configuration menu
    Copy the full SHA
    fd8e640 View commit details
    Browse the repository at this point in the history

  4. placeholder for filtering methods

    @michael-gemmell
    michael-gemmell committed Oct 12, 2023
    Configuration menu
    Copy the full SHA
    3196e03 View commit details
    Browse the repository at this point in the history

  5. gutted workflow class / methods removed to context objects

    @michael-gemmell
    michael-gemmell committed Oct 12, 2023
    Configuration menu
    Copy the full SHA
    4979c2a View commit details
    Browse the repository at this point in the history

  6. gutted workflow class / methods removed to context objects

    @michael-gemmell
    michael-gemmell committed Oct 12, 2023
    Configuration menu
    Copy the full SHA
    97bcfa8 View commit details
    Browse the repository at this point in the history

  7. moved ln_prior to stand alone func

    @michael-gemmell
    michael-gemmell committed Oct 12, 2023
    Configuration menu
    Copy the full SHA
    1427561 View commit details
    Browse the repository at this point in the history

  8. Initialisation fixed

    @michael-gemmell
    michael-gemmell committed Oct 12, 2023
    Configuration menu
    Copy the full SHA
    33ec07a View commit details
    Browse the repository at this point in the history

Commits on Oct 17, 2023

  1. fixed formatting/plotting of optimiser results and adjusted moments s… 

    …topping criteria to normalise for chain length
    @michael-gemmell
    michael-gemmell committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    9b40044 View commit details
    Browse the repository at this point in the history

  2. TS dimension bug fix added

    @michael-gemmell
    michael-gemmell committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    1bc37b1 View commit details
    Browse the repository at this point in the history

  3. formatting for results dict fixed

    @michael-gemmell
    michael-gemmell committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    bc5634e View commit details
    Browse the repository at this point in the history

  4. Now plots for all time points

    @michael-gemmell
    michael-gemmell committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    365e4d8 View commit details
    Browse the repository at this point in the history

  5. renamed some nodes and removed TIME_BINS

    @michael-gemmell
    michael-gemmell committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    2c6634a View commit details
    Browse the repository at this point in the history

  6. renamed bayes_workflow_example -> bayes_workflow

    @michael-gemmell
    michael-gemmell committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    65060e9 View commit details
    Browse the repository at this point in the history

  7. missing self.

    @michael-gemmell
    michael-gemmell committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    d81581f View commit details
    Browse the repository at this point in the history

  8. missing self.

    @michael-gemmell
    michael-gemmell committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    bfd6027 View commit details
    Browse the repository at this point in the history

  9. removed debug printing from sample_with_moments

    @michael-gemmell
    michael-gemmell committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    1b05580 View commit details
    Browse the repository at this point in the history

  10. renamed batch_bda -> bda_run

    @michael-gemmell
    michael-gemmell committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    1955db2 View commit details
    Browse the repository at this point in the history

  11. debug printing for stopping condition is now an optional input

    @michael-gemmell
    michael-gemmell committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    89393c9 View commit details
    Browse the repository at this point in the history

  12. moved back to flat delta moment stopping condition

    @michael-gemmell
    michael-gemmell committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    256e411 View commit details
    Browse the repository at this point in the history

  13. default to plotting to test

    @michael-gemmell
    michael-gemmell committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    4228a4e View commit details
    Browse the repository at this point in the history

  14. comments

    @michael-gemmell
    michael-gemmell committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    4899aef View commit details
    Browse the repository at this point in the history

  15. moved sample_from_priors to external function

    @michael-gemmell
    michael-gemmell committed Oct 17, 2023
    Configuration menu
    Copy the full SHA
    f0590a6 View commit details
    Browse the repository at this point in the history

Commits on Oct 19, 2023

  1. moved checking of prior keys from sample_from_priors to BayesSettings… 

    … dataclass
    @michael-gemmell
    michael-gemmell committed Oct 19, 2023
    Configuration menu
    Copy the full SHA
    bb2e8e9 View commit details
    Browse the repository at this point in the history

Commits on Oct 24, 2023

  1. _build_bckc now creates nested dictionary instead of flat

    @michael-gemmell
    michael-gemmell committed Oct 24, 2023
    Configuration menu
    Copy the full SHA
    55e01f8 View commit details
    Browse the repository at this point in the history

  2. filtering now works on spectra with t dim

    @michael-gemmell
    michael-gemmell committed Oct 24, 2023
    Configuration menu
    Copy the full SHA
    5219422 View commit details
    Browse the repository at this point in the history

  3. renamed bayes_settings -> blackbox_settings

    @michael-gemmell
    michael-gemmell committed Oct 24, 2023
    Configuration menu
    Copy the full SHA
    153536b View commit details
    Browse the repository at this point in the history

  4. renamed bayes_settings -> blackbox_settings

    @michael-gemmell
    michael-gemmell committed Oct 24, 2023
    Configuration menu
    Copy the full SHA
    23150eb View commit details
    Browse the repository at this point in the history

  5. renamed bayes_settings -> blackbox_settings

    @michael-gemmell
    michael-gemmell committed Oct 24, 2023
    Configuration menu
    Copy the full SHA
    d1a7654 View commit details
    Browse the repository at this point in the history

  6. renamed bayes_settings -> blackbox_settings

    @michael-gemmell
    michael-gemmell committed Oct 24, 2023
    Configuration menu
    Copy the full SHA
    59071ac View commit details
    Browse the repository at this point in the history

  7. added mock transforms to default_factory

    @michael-gemmell
    michael-gemmell committed Oct 24, 2023
    Configuration menu
    Copy the full SHA
    8e3cfa1 View commit details
    Browse the repository at this point in the history

  8. cxfi_tws_c example transform added

    @michael-gemmell
    michael-gemmell committed Oct 24, 2023
    Configuration menu
    Copy the full SHA
    dc3d7a3 View commit details
    Browse the repository at this point in the history

  9. ModelSettings dataclass created to handle model initialisation and ca… 

    …lling settings
    @michael-gemmell
    michael-gemmell committed Oct 24, 2023
    Configuration menu
    Copy the full SHA
    1f4108f View commit details
    Browse the repository at this point in the history

  10. missing .self

    @michael-gemmell
    michael-gemmell committed Oct 24, 2023
    Configuration menu
    Copy the full SHA
    c9cb344 View commit details
    Browse the repository at this point in the history

  11. stopping criteria sampling rate added to OptimiserSettings

    @michael-gemmell
    michael-gemmell committed Oct 24, 2023
    Configuration menu
    Copy the full SHA
    8fbc4ee View commit details
    Browse the repository at this point in the history

  12. typo

    @michael-gemmell
    michael-gemmell committed Oct 24, 2023
    Configuration menu
    Copy the full SHA
    b0f62e4 View commit details
    Browse the repository at this point in the history

Commits on Oct 25, 2023

  1. added moments tests

    @michael-gemmell
    michael-gemmell committed Oct 25, 2023
    Configuration menu
    Copy the full SHA
    5f791b7 View commit details
    Browse the repository at this point in the history

  2. adjusted nimp.y0 prior

    @michael-gemmell
    michael-gemmell committed Oct 25, 2023
    Configuration menu
    Copy the full SHA
    5cc2c2d View commit details
    Browse the repository at this point in the history

  3. example run updated

    @michael-gemmell
    michael-gemmell committed Oct 25, 2023
    Configuration menu
    Copy the full SHA
    ffd70db View commit details
    Browse the repository at this point in the history

Commits on Oct 26, 2023

  1. more tests for walkers

    @michael-gemmell
    michael-gemmell committed Oct 26, 2023
    Configuration menu
    Copy the full SHA
    54fb968 View commit details
    Browse the repository at this point in the history

  2. typo

    @michael-gemmell
    michael-gemmell committed Oct 26, 2023
    Configuration menu
    Copy the full SHA
    7e72f8d View commit details
    Browse the repository at this point in the history

Commits on Oct 30, 2023

  1. 11089 pulse added

    @michael-gemmell
    michael-gemmell committed Oct 30, 2023
    Configuration menu
    Copy the full SHA
    d54840d View commit details
    Browse the repository at this point in the history

  2. temporarily added channel filters for TS / CXFF_TWS_C

    @michael-gemmell
    michael-gemmell committed Oct 30, 2023
    Configuration menu
    Copy the full SHA
    78fd127 View commit details
    Browse the repository at this point in the history

Commits on Oct 31, 2023

  1. 11089 run added

    @michael-gemmell
    michael-gemmell committed Oct 31, 2023
    Configuration menu
    Copy the full SHA
    0ec72e5 View commit details
    Browse the repository at this point in the history

  2. expanded wped prior for fitting the pedestal

    @michael-gemmell
    michael-gemmell committed Oct 31, 2023
    Configuration menu
    Copy the full SHA
    e39440d View commit details
    Browse the repository at this point in the history

Commits on Nov 2, 2023

  1. Test for walker moves

    @michael-gemmell
    michael-gemmell committed Nov 2, 2023
    Configuration menu
    Copy the full SHA
    70578c8 View commit details
    Browse the repository at this point in the history

  2. testing DE-MCMC

    @michael-gemmell
    michael-gemmell committed Nov 2, 2023
    Configuration menu
    Copy the full SHA
    5398211 View commit details
    Browse the repository at this point in the history

  3. Full 11089 run with DEMOVES

    @michael-gemmell
    michael-gemmell committed Nov 2, 2023
    Configuration menu
    Copy the full SHA
    4cffa96 View commit details
    Browse the repository at this point in the history

Commits on Nov 3, 2023

  1. testing without emcee move.DESnookerMove

    @michael-gemmell
    michael-gemmell committed Nov 3, 2023
    Configuration menu
    Copy the full SHA
    f4726e4 View commit details
    Browse the repository at this point in the history

  2. Testing without DESnookerMove

    @michael-gemmell
    michael-gemmell committed Nov 3, 2023
    Configuration menu
    Copy the full SHA
    7039991 View commit details
    Browse the repository at this point in the history

  3. Merge branch 'st40' into bda

    @marcosertoli
    marcosertoli authored Nov 3, 2023
    Configuration menu
    Copy the full SHA
    de2c474 View commit details
    Browse the repository at this point in the history

Commits on Nov 17, 2023

  1. Merge branch 'bda' of github.com:ukaea/Indica into bda

    @michael-gemmell
    michael-gemmell committed Nov 17, 2023
    Configuration menu
    Copy the full SHA
    5ca60f4 View commit details
    Browse the repository at this point in the history

Commits on Dec 5, 2023

  1. fixed rho_poloidal -> rhop

    @michael-gemmell
    michael-gemmell committed Dec 5, 2023
    Configuration menu
    Copy the full SHA
    aa88c26 View commit details
    Browse the repository at this point in the history

Commits on Dec 7, 2023

  1. removed wrapper of kernels

    @michael-gemmell
    michael-gemmell committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    d3b1bd4 View commit details
    Browse the repository at this point in the history

  2. dt added to read_ts

    @michael-gemmell
    michael-gemmell committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    c3e4a36 View commit details
    Browse the repository at this point in the history

  3. using binned data for fits instead of raw

    @michael-gemmell
    michael-gemmell committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    5923ea6 View commit details
    Browse the repository at this point in the history

  4. hack to prevent dtype interpolation error

    @michael-gemmell
    michael-gemmell committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    9a1420b View commit details
    Browse the repository at this point in the history

  5. closing plots after use

    @michael-gemmell
    michael-gemmell committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    c89eed8 View commit details
    Browse the repository at this point in the history

  6. set_ts_profiles added to plasma_context

    @michael-gemmell
    michael-gemmell committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    b7fd1a7 View commit details
    Browse the repository at this point in the history

  7. update_profiles now only updates profiles which match parameters prov… 

    …ided
    @michael-gemmell
    michael-gemmell committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    cb8d99c View commit details
    Browse the repository at this point in the history

Commits on Dec 8, 2023

  1. __main__ params adjusted

    @michael-gemmell
    michael-gemmell committed Dec 8, 2023
    Configuration menu
    Copy the full SHA
    f5aadf3 View commit details
    Browse the repository at this point in the history

  2. reformatting __main__ to run mock example

    @michael-gemmell
    michael-gemmell committed Dec 8, 2023
    Configuration menu
    Copy the full SHA
    fc577a2 View commit details
    Browse the repository at this point in the history

Commits on Dec 13, 2023

  1. fixed error in zeff calculatio

    @michael-gemmell
    michael-gemmell committed Dec 13, 2023
    Configuration menu
    Copy the full SHA
    97cad54 View commit details
    Browse the repository at this point in the history

Commits on Dec 14, 2023

  1. removed reading ts and added post_process_ts

    @michael-gemmell
    michael-gemmell committed Dec 14, 2023
    Configuration menu
    Copy the full SHA
    5e16452 View commit details
    Browse the repository at this point in the history

Commits on Jan 18, 2024

  1. reorganising post_processing args

    @michael-gemmell
    michael-gemmell committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    5abc891 View commit details
    Browse the repository at this point in the history

  2. R_midplane added to profiles

    @michael-gemmell
    michael-gemmell committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    7f7ac08 View commit details
    Browse the repository at this point in the history

  3. gitcommit and user added

    @michael-gemmell
    michael-gemmell committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    883546b View commit details
    Browse the repository at this point in the history

  4. R_midplane added

    @michael-gemmell
    michael-gemmell committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    67c1a44 View commit details
    Browse the repository at this point in the history

  5. R_midplane co-ordinate transform added

    @michael-gemmell
    michael-gemmell committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    fededb1 View commit details
    Browse the repository at this point in the history

  6. violin plots take error as input

    @michael-gemmell
    michael-gemmell committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    2b9555a View commit details
    Browse the repository at this point in the history

  7. example workflow corrected

    @michael-gemmell
    michael-gemmell committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    e5a404b View commit details
    Browse the repository at this point in the history

  8. error handling for empty data dicts

    @michael-gemmell
    michael-gemmell committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    6be843f View commit details
    Browse the repository at this point in the history

  9. updated to include set_ts option

    @michael-gemmell
    michael-gemmell committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    f9e9452 View commit details
    Browse the repository at this point in the history

  10. python 3.8 -> poetry 3.9

    @michael-gemmell
    michael-gemmell committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    a14650e View commit details
    Browse the repository at this point in the history

  11. python >= 3.9 required

    @michael-gemmell
    michael-gemmell committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    b006ca5 View commit details
    Browse the repository at this point in the history

  12. pint added for standard_utility

    @michael-gemmell
    michael-gemmell committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    a2876ae View commit details
    Browse the repository at this point in the history

Commits on Jan 22, 2024

  1. default to 43000000

    @michael-gemmell
    michael-gemmell committed Jan 22, 2024
    Configuration menu
    Copy the full SHA
    5663c35 View commit details
    Browse the repository at this point in the history

  2. bda_nodes function is now a global var

    @michael-gemmell
    michael-gemmell committed Jan 22, 2024
    Configuration menu
    Copy the full SHA
    ed43c55 View commit details
    Browse the repository at this point in the history

  3. check for tree and use NEW or EDIT mode

    @michael-gemmell
    michael-gemmell committed Jan 22, 2024
    Configuration menu
    Copy the full SHA
    865c4a1 View commit details
    Browse the repository at this point in the history

  4. check for tree and use NEW or EDIT mode

    @michael-gemmell
    michael-gemmell committed Jan 22, 2024
    Configuration menu
    Copy the full SHA
    1637d1e View commit details
    Browse the repository at this point in the history

  5. renaming Nimp -> niz1

    @michael-gemmell
    michael-gemmell committed Jan 22, 2024
    Configuration menu
    Copy the full SHA
    b85bde8 View commit details
    Browse the repository at this point in the history

  6. Plasma updating now works with Niz1/2_prof instead of Nimp_prof

    @michael-gemmell
    michael-gemmell committed Jan 22, 2024
    Configuration menu
    Copy the full SHA
    503fd5c View commit details
    Browse the repository at this point in the history

Commits on Jan 24, 2024

  1. Changing default use case

    @michael-gemmell
    michael-gemmell committed Jan 24, 2024
    Configuration menu
    Copy the full SHA
    e0fed0e View commit details
    Browse the repository at this point in the history

  2. Nimp_prof -> Niz1_prof

    @michael-gemmell
    michael-gemmell committed Jan 24, 2024
    Configuration menu
    Copy the full SHA
    3b12469 View commit details
    Browse the repository at this point in the history

  3. Option for fitting rho profiles as if symmetric in -rho

    @michael-gemmell
    michael-gemmell committed Jan 24, 2024
    Configuration menu
    Copy the full SHA
    5a62608 View commit details
    Browse the repository at this point in the history

  4. Option for fitting rho profiles as if symmetric in -rho

    @michael-gemmell
    michael-gemmell committed Jan 24, 2024
    Configuration menu
    Copy the full SHA
    eb30028 View commit details
    Browse the repository at this point in the history

Commits on Jan 26, 2024

  1. Alsu's 11XXX runs added

    @michael-gemmell
    michael-gemmell committed Jan 26, 2024
    Configuration menu
    Copy the full SHA
    3eefe45 View commit details
    Browse the repository at this point in the history

  2. default values adjusted for Nimp

    @michael-gemmell
    michael-gemmell committed Jan 26, 2024
    Configuration menu
    Copy the full SHA
    0db793b View commit details
    Browse the repository at this point in the history

  3. priors adjusted for Nimp

    @michael-gemmell
    michael-gemmell committed Jan 26, 2024
    Configuration menu
    Copy the full SHA
    d7dabeb View commit details
    Browse the repository at this point in the history

Commits on Feb 5, 2024

  1. 11032 added

    @michael-gemmell
    michael-gemmell committed Feb 5, 2024
    Configuration menu
    Copy the full SHA
    50cea66 View commit details
    Browse the repository at this point in the history

  2. fixed missing self.

    @michael-gemmell
    michael-gemmell committed Feb 5, 2024
    Configuration menu
    Copy the full SHA
    6d39408 View commit details
    Browse the repository at this point in the history

  3. fixed missing self.

    @michael-gemmell
    michael-gemmell committed Feb 5, 2024
    Configuration menu
    Copy the full SHA
    174b7a4 View commit details
    Browse the repository at this point in the history

  4. initial commit

    @michael-gemmell
    michael-gemmell committed Feb 5, 2024
    Configuration menu
    Copy the full SHA
    9c7e76d View commit details
    Browse the repository at this point in the history

  5. mocking opt_data keys

    @michael-gemmell
    michael-gemmell committed Feb 5, 2024
    Configuration menu
    Copy the full SHA
    718e091 View commit details
    Browse the repository at this point in the history

  6. speeding up run by limiting iterations

    @michael-gemmell
    michael-gemmell committed Feb 5, 2024
    Configuration menu
    Copy the full SHA
    ac148e9 View commit details
    Browse the repository at this point in the history

  7. merging with main

    @michael-gemmell
    michael-gemmell committed Feb 5, 2024
    Configuration menu
    Copy the full SHA
    feecafb View commit details
    Browse the repository at this point in the history

  8. reverting temporary bugfix

    @michael-gemmell
    michael-gemmell committed Feb 5, 2024
    Configuration menu
    Copy the full SHA
    d933848 View commit details
    Browse the repository at this point in the history

  9. removing comment

    @michael-gemmell
    michael-gemmell committed Feb 5, 2024
    Configuration menu
    Copy the full SHA
    d6a0735 View commit details
    Browse the repository at this point in the history

  10. if neither mds_write or plot is true -> don't save pickle

    @michael-gemmell
    michael-gemmell committed Feb 5, 2024
    Configuration menu
    Copy the full SHA
    bf7e6ee View commit details
    Browse the repository at this point in the history

  11. gitpython added

    @michael-gemmell
    michael-gemmell committed Feb 5, 2024
    Configuration menu
    Copy the full SHA
    7baca4c View commit details
    Browse the repository at this point in the history

  12. commenting out failing test due to helike model using sel instead of … 

    …interp in call
    @michael-gemmell
    michael-gemmell committed Feb 5, 2024
    Configuration menu
    Copy the full SHA
    96bdd90 View commit details
    Browse the repository at this point in the history

Commits on Feb 6, 2024

  1. pre-commit

    @michael-gemmell
    michael-gemmell committed Feb 6, 2024
    Configuration menu
    Copy the full SHA
    270514e View commit details
    Browse the repository at this point in the history

  2. mypy fixes

    @michael-gemmell
    michael-gemmell committed Feb 6, 2024
    Configuration menu
    Copy the full SHA
    5c2bf8f View commit details
    Browse the repository at this point in the history

Commits on Feb 7, 2024

  1. Reinstated set_equilibrium with default == False; removed additional … 

    …raw_data_ dictionary
    @marcosertoli
    marcosertoli committed Feb 7, 2024
    Configuration menu
    Copy the full SHA
    1f77f2f View commit details
    Browse the repository at this point in the history

  2. Ran: poetry update

    @marcosertoli
    marcosertoli committed Feb 7, 2024
    Configuration menu
    Copy the full SHA
    5a76299 View commit details
    Browse the repository at this point in the history