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Issues list

AttributeError: 'MyReader' object has no attribute 'info' for vcf file
#341 opened Nov 21, 2022 by anummunirmughal
import error
#339 opened Jul 1, 2022 by gebdu
FILTER line is malformed
#337 opened Feb 14, 2022 by myourshaw
2
Cannot use import vfc
#336 opened Feb 13, 2022 by doctorasgr
1
===> PyVCF3 <<===
#335 opened Jan 13, 2022 by dridk
9
error in PyVCF setup command: use_2to3 is invalid
#334 opened Nov 4, 2021 by MingchenInSZ
11
install fails if setuptools >= 58
#332 opened Sep 29, 2021 by myourshaw
1
VCF reader.fetch
#330 opened May 26, 2021 by RNJ1993
parsing converts QUAL == zero to period, inconsistent numeric type breaks downstream filtering
#329 opened May 3, 2021 by katrinakalantar
1
Resource warning while using the library due to file not being closed in parser.py
#328 opened Apr 12, 2021 by Rohan-cod
3
vcf_filter.py python3 error with --output
#327 opened Mar 15, 2021 by ghost
Pandas dataframe integration
#324 opened Jul 14, 2020 by hkmztrk
Getting an OSError when trying vcf.fetch()
#323 opened Jun 23, 2020 by DeadlineWasYesterday
Single threaded but uses pysam, so not single threaded
#322 opened May 18, 2020 by schultzm
ValueError: could not convert string to float: 'NA'
#318 opened Oct 20, 2019 by dridk
5
VCF Filtration doesn't work with uncompressed, or UTF-8
#317 opened Aug 8, 2019 by OgnjenMilicevic
1
Cannot import PyVCF in Python 3.5 after successful installation by pip
#316 opened Jul 5, 2019 by nkuyfq
1
Walk_together cannot handle multiple mutation on a same position
#315 opened Jun 26, 2019 by Wan-Yifei
is this alive?
#314 opened May 25, 2019 by greyltc
3
Adding a new FILTER in the VCF header
#313 opened May 24, 2019 by saty89
file progression
#312 opened May 2, 2019 by dridk
fetch record using "ID"
#311 opened Apr 30, 2019 by aparna06
usage example in README is outdated
#310 opened Feb 20, 2019 by zmiimz
Old use of print function
#309 opened Feb 12, 2019 by mbhall88
hiConfDeNovo \ loConfDeNovo bug
#308 opened Feb 10, 2019 by gordonmi
ProTip! Follow long discussions with comments:>50.