Added citation information #6
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| name: Snakemake CI | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master" ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Snakemake workflow | |
| uses: snakemake/snakemake-github-action@v1 | |
| with: | |
| directory: '.' | |
| snakefile: 'Snakefile' | |
| args: '--cores 1 --use-conda --conda-cleanup-pkgs cache' | |
| stagein: '' # additional preliminary commands to run (can be multiline) | |
| - name: results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: results | |
| path: results/ | |
| - name: plots | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: qc_raw | |
| path: qc/multiqc_report.html | |
| - name: qc_trimmed | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: qc_trimmed | |
| path: qc/multiqc_trimmed_report_multiqc_report.html |