Lab meeting schedule

Fall 2024

9/26 Andy SOTL address
10/3 🍎 🍯 board games?
10/10 Silas (Intro to Nextflow)
10/17 Manon Curaudeau "A multidisciplinary approach to identify the animal reservoir(s) of the Monkeypox virus in Africa" / Gilia (practice talk for TWS)
10/24 Angel / Clara?
10/31 Nate (phyloseminar practice)
11/7 Thomas / Peter
11/14 Jordan R. / Gabby
11/21 Fabian's interview
11/28 🦃
12/5 Ananya / Anastasia / aliteration
12/12 Kevin / Andy / Zach
12/19 Scott / Jiseon
12/26 🎄

Summer 2024

6/17 1-3 PM BIOLOGY GRADUATION! Congrats Murillo Victoria and Gabby
6/20 Andy will blather excitedly about pytorch lightning (unless there is real SCIENCE)
6/27 Angel and Clara (SMBE practice talks)
7/25 Silas has half baked ideas about roadkill and dispersal evolution
8/1 Alex (SPUR practice talk)
8/22 Gregor Gorjanc about what he does
9/12 Sonia Cebrián Camisón (Dispersion and spatial genetic population structure in Culex mosquitoes)

Spring 2024

bumped from Winter:

4/4 Gabby (cephneuro practice talk) + lab expectations/formalize schedule?
4/11 Silas (m'lint) + Gilia
4/18 Jordan (practice proposal presentation)
4/25 Jana (bees) + Angel (barnacles)
5/2 Andy (Lab expectations)
5/9 Nate (Something) + Peter
5/16 Scott (TELL[all]seq) + Jiseon (popgenSBI?)
5/23 Clara (Spacey sweepy goodness) + Andy
5/30 Anastasia (gene reg. networks)
6/6 Laurits Skov
6/13 ~~Caleb~~ (coevo and celebration and performing his civic duties)

Winter 2024

1/11: Make schedule + Jordan (LCC talk practice)
1/18: Peter (OSU prep)
1/25: Clara (Practice talk) + Nate (ancient samps.)
2/1: Jiseon (??)
2/8: Jeff Ross-Ibarra
2/15: Chris (will lead a paper, but someone else should take the slot)
2/22: Bianca pdoc talk
2/29: ~~Gilia (ckmr) + Gabby (octos)~~ Rex Jiang, Postdoc candidate
3/7: TAGC conference
3/14: Caleb (coevolution and grad school tea) + Sam Champer
3/21: Yun Deng
3/28: SPRANG BREAK 🌞

Fall 2023

9/28: Make schedule + Scott et al introduce "computers"
10/5: Nate (tsupdate) and Silas (octop*)
10/12: Matt Hahn -- poolseq recombination something something
10/14 Eclipse!!!
10/19: Angel (barnacles) & M'Jordan (m'jobs)
10/26: Clara (sweeps) & Bob (?)
11/2: Jiseon (pgiNN) & Chris (mapNN)
11/9: Victoria (cichlids) & Bruce (uncertainness)
Sunday 11/18 (?): Labsgiving at Andy's 🦃
11/30: Anastasia (worms) & Scott (mosquitos)
12/7: Gilia (spaghetti) & Caleb (coevolution)
12/14: Jordan (ecolocator) & Peter (unimportant things)

Summer 2023

latest population genetics papers!

6/22 Andy -- https://www.biorxiv.org/content/10.1101/2023.04.27.538386v1
6/29 M'Jordan -- Baboon Wavelets, the final frontier -- https://www.biorxiv.org/content/10.1101/2023.05.25.542345v2
7/6 Murillo -- Reconstructing cell type evolution across species through cell phylogenies of single-cell RNAseq data
7/13 SMBE feedback
7/20 skip
7/27 skip
smbe??
8/03 skip (sorry)
8/10 Nate -- Genes, Genealogies, Geography of Quebec
8/17 Jiseon -- On the origin and structure of haplotype blocks
9/7 Chris --predicting genetic diversity from satellite images
9/14 Scott -- TRAILS: tree reconstruction of ancestry using incomplete lineage sorting
9/21 Jordan R. -- research update!

Spring 2023

(spring/summer conference spreadsheet: here)

Thursdays at 1pm. Presentation order is determined by Rochambeau (rock-paper-scissors).

4/6 Organization
4/13 Nathan and Peter
4/20 Walid Mawass (current postdoc with Joanna Masel at U. Arizona)
4/27 Jiseon and Chris
5/4 M'Lint
5/11 Nate and Gilia
5/18 Gabby and Anastasia
5/25 Scott and Murillo (?)
6/1 Clara and Jasmin (?)
6/8 Victoria and Caleb and Andy

Winter 2023

1/12: Planning
1/19: Georgia
1/26: CJ visit to talk about cell-free DNA methods
2/2: Saurabh -- how to win 💪🏼 + Murillo
2/9: Jiseon + Silas + dunder kings
2/16: Nate and Gilia
2/23: Jordan -- MINT +? and Victoria
3/2: Chris
3/9: ( PROBGEN 3/8 🚨 )
3/14 Clara extra special space proposal practice
3/16: Jordan R. and Titas
3/23: Anastasia + Scott?

Fall 2022

Thursdays at 1pm. Presentation order is determined by Rochambeau (rock-paper-scissors).

9/22: Organizing the lab meeting schedule
9/29: Overview of KR colab research and Gabby
10/06: Andy (stdpopsim analysis) and Matt
10/13: Georgia and Scott about the An. funestus manuscript
10/20: Saurabh and Jordan
10/27: Chris and Gilia (practice for TWS)
11/03: Nate and Jiseon
11/10: Murillo and Clara
11/17: Anita Lerch (Univ Notre Dame; CKMR)
12/08 (09?): Dan Schrider

Spring 2022

4/7: Chris/(someone else too)
4/21: CJ / Jeff (former postdocs) -- the view of science from industry?
4/28: Saurabh/Matt
5/5: Peter (present Spatial stuff from collaboration with Alison)
5/12: Andy (present Chicago talk)
5/19: Victoria(poster ideas)/Clara(poster)
5/26: Anastasia (PEQG)/ Murillo (PEQG)
5/27: Gilia Proposal Talk
6/2: Vince

Winter 2022

1/6: Jiseon Min (postdoc candidate)
1/13: R. Nicolas Lou (postdoc candidate)
1/20: Anubhab Khan (postdoc candidate)
1/27: Silas Tittes (Staff Scientist)
2/3: Abhilesh Dhawanjewar (postdoc candidate)
2/10: Arnaud Becheler (postdoc candidate)
2/17: discussion about postdoc candidates and other hiring
2/24:
3/3: Nathan Villiger
3/10: rotation practice talks (Clara, Mandy, Rebecca)

Fall 2021

9/30: Chris
10/7: Saurabh
10/14: Andy
10/21: Angel Rivera-Colón
10/28: Victoria/Gabby
11/4: Peter/Murillo
11/11 (Veteran's day)
11/18: Gilia/Anastasia
11/25: (Thanksgiving)
12/2: Mandie/Vince
12/9: Clare/Matt

Summer 2021

SMBE talks and miscellaneous stuff.

7/1: Evolution of phenotypic variance provides insights into the genetic basis of adaption
7/15: SMBE Talks - Linked selection 1
7/22: SMBE Talks - Linked selection 2
8/5: Conor Walker, Cambridge / EMBL-EBI
8/12: Matt Gibson, Indiana University
9/8: Jordon Anderson, Duke University
9/16: Scott Small, Notre Dame

Spring 2021

4/1: april fools, just making decisions!
4/8: stdpopsim hackathon
4/15: probgen
4/22: Jeff / Peter
4/29: Vince / Clara
5/6: Victoria practice
5/13: Bob Week
5/20: Gabby practice
5/27: Saurabh
6/3: Gilia rotation practice / Matt
6/10: Anastasia / Andy
6/17: Chris / Murillo

Winter 2021

1/14: Gower et al
1/21: Deng et al
1/28: (Andy/Clara)
2/4: IE2 grad recruitment events
2/11: (Jeff/Gabby)
2/18: (Gilia/Matt)
2/25: (Murillo/Peter) Wohns et al. - A unified genealogy of modern and ancient genomes
3/4: (Saurabh/Victoria)
3/11: (Savanah (rotation practice?))
3/18: (Vince/Anastasia)

Fall 2020

Struggles and/or research updates:

10/8: (Andy/Jeff)
10/15: (Clara/Gabby)
10/22: (Gilia/Matt)
10/29: (Murillo/Peter)
11/5: (Saurabh/Victoria)
11/12: Chris Smith- "Challenges and successes from using whole genome sequencing data with approximate Bayesian computation" (website)
11/19: (Vince/Anastasia)
12/3: Gilia practice rotation talk

Summer 2020

Start with two people doing at most five minute updates on their work (maybe a figure, maybe not), alphabetically (CJ, Jeff, Saurabh, Vince, Victoria, Gabby, Andy, Matt, Peter, Clara, Murillo, Anastasia, Lizka)

06/25: (CJ/Jeff)
07/02: (Saurabh, Vince) Close Kin Mark-Recapture (Peter)
07/09: (Victoria/Gabby)
07/16: (Andy/Matt)
07/23: you enjoy myself
07/30: (Peter/Clara)
08/06: (Murillo/Anastasia)
08/13: (Lizka)
08/20: Mehreen Mughal (website)
08/27: Matt, https://arxiv.org/abs/1902.11136
09/03: Automatic Inference of Demographic Parameters Using Generative Adversarial Networks - Murillo
09/10: Moon et al (paper)
09/17: Andy, Grant ideas for the term
09/24: Vince, F32 aims

Spring 2020

Meetings on Thursdays from 11:00am to 12:00pm in Zoom.

04/03 - CJ, locator
04/10 - Jeff, Anastasia
04/16 - Saurabh
04/23 - Gabby, octo update
04/30 - Carl Veller talk
05/07 - Pavitra's talk
05/14 - A rigorous measure of genome-wide genetic shuffling that takes into account crossover positions and Mendel’s second law
05/21 - Robust Forward Simulations of Recurrent Hitchhiking (Murillo)
05/28 -
06/04 - Victoria presents host-pathogen simulations
06/11 - Matt talks about PDE constraints
06/18 - Gavin talks about ???

Winter 2020

Meetings on Fridays from 2-3pm in 301 Pacific.

01/10 - Aaron Ragsdale talk
01/17 -
01/24 - Lewontin book 5th chapter
01/31 - Matt Lukac talk
02/07 - Is the population size of a species relevant to its evolution? (Andy)
02/14 - Revisiting an Old Riddle: What Determines Genetic Diversity Levels within Species? (CJ)
02/21 - Patterns of Neutral Diversity Under General Models of Selective Sweeps (Peter)
02/28 - A Genomic Map of the Effects of Linked Selection in Drosophila (Murillo)
03/06 - Natural Selection Constrains Neutral Diversity across A Wide Range of Species (Matt)
03/13 - Causes of natural variation in fitness: Evidence from studies of Drosophila populations (Vince)

Fall 2019