Update precompile script to use new example files

Signed-off-by: Thomas A. Christensen II <[email protected]>
ksumngs · Apr 28, 2022 · 67a6668 · 67a6668
1 parent 47a7484
commit 67a6668
Showing 1 changed file with 10 additions and 2 deletions.
diff --git a/precompile_app.jl b/precompile_app.jl
@@ -15,6 +15,14 @@ push!(ARGS, "--output")
 push!(ARGS, "example/output.vcf")
 push!(ARGS, "--quality")
 push!(ARGS, "12")
+push!(ARGS, "--frequency")
+push!(ARGS, "0.001")
+push!(ARGS, "--position")
+push!(ARGS, "0.001")
+push!(ARGS, "--significance")
+push!(ARGS, "0.5")
+push!(ARGS, "--depth")
+push!(ARGS, "1")
 
 HapLink.haplink()
 clear_args()
@@ -42,9 +50,9 @@ push!(ARGS, "example/reference.fasta")
 push!(ARGS, "--output")
 push!(ARGS, "example/output.yaml")
 push!(ARGS, "--significance")
-push!(ARGS, "0.05")
+push!(ARGS, "0.5")
 push!(ARGS, "--depth")
-push!(ARGS, "50")
+push!(ARGS, "1")
 push!(ARGS, "--method")
 push!(ARGS, "raw")