GIT: Merge branch 'main' into JOSS

metagentools · Sep 26, 2024 · 63b3302 · 63b3302
2 parents 50de1b8 + 6cbc1d6
commit 63b3302
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Showing 9 changed files with 19 additions and 18 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -24,11 +24,12 @@ dependencies = ["click",
   "graphbin2",
   "metacoag>=1.2.1"]
 classifiers = [
-        "Development Status :: 3 - Alpha",
+        "Development Status :: 5 - Production/Stable",
         "Intended Audience :: Science/Research",
         "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
         "Topic :: Scientific/Engineering :: Bio-Informatics",
-        "Operating System :: OS Independent",
+        "Operating System :: MacOS",
+        "Operating System :: POSIX",
         "Programming Language :: Python :: 3",
     ]
 # the following are inferred from the source code

diff --git a/src/gbintk/__init__.py b/src/gbintk/__init__.py
@@ -4,7 +4,7 @@
 __copyright__ = "Copyright 2023-2024, GraphBin-Tk Project"
 __credits__ = ["Vijini Mallawaarachchi", "Anuradha Wickramarachchi", "Yu Lin"]
 __license__ = "GPL-3.0"
-__version__ = "0.1.1"
+__version__ = "1.0.0"
 __maintainer__ = "Vijini Mallawaarachchi"
 __email__ = "[email protected]"
-__status__ = "Alpha"
+__status__ = "Production/Stable"
diff --git a/src/gbintk/cli.py b/src/gbintk/cli.py
@@ -10,10 +10,10 @@
 __copyright__ = "Copyright 2023-2024, GraphBin-Tk Project"
 __credits__ = ["Vijini Mallawaarachchi", "Anuradha Wickramarachchi", "Yu Lin"]
 __license__ = "GPL-3.0"
-__version__ = "0.1.1"
+__version__ = "1.0.0"
 __maintainer__ = "Vijini Mallawaarachchi"
 __email__ = "[email protected]"
-__status__ = "Alpha"
+__status__ = "Production/Stable"
 
 
 # Setup logger

diff --git a/src/gbintk/support/__init__.py b/src/gbintk/support/__init__.py
@@ -4,7 +4,7 @@
 __copyright__ = "Copyright 2023-2024, GraphBin-Tk Project"
 __credits__ = ["Vijini Mallawaarachchi", "Anuradha Wickramarachchi", "Yu Lin"]
 __license__ = "GPL-3.0"
-__version__ = "0.1.1"
+__version__ = "1.0.0"
 __maintainer__ = "Vijini Mallawaarachchi"
 __email__ = "[email protected]"
-__status__ = "Alpha"
+__status__ = "Production/Stable"
diff --git a/src/gbintk/support/evaluate.py b/src/gbintk/support/evaluate.py
@@ -17,10 +17,10 @@
 __copyright__ = "Copyright 2023-2024, GraphBin-Tk Project"
 __credits__ = ["Vijini Mallawaarachchi", "Anuradha Wickramarachchi", "Yu Lin"]
 __license__ = "GPL-3.0"
-__version__ = "0.1.1"
+__version__ = "1.0.0"
 __maintainer__ = "Vijini Mallawaarachchi"
 __email__ = "[email protected]"
-__status__ = "Alpha"
+__status__ = "Production/Stable"
 
 # create logger
 logger = logging.getLogger(f"GraphBin-Tk {__version__}")

diff --git a/src/gbintk/support/prep_result.py b/src/gbintk/support/prep_result.py
@@ -21,10 +21,10 @@
 __copyright__ = "Copyright 2023-2024, GraphBin-Tk Project"
 __credits__ = ["Vijini Mallawaarachchi", "Anuradha Wickramarachchi", "Yu Lin"]
 __license__ = "GPL-3.0"
-__version__ = "0.1.1"
+__version__ = "1.0.0"
 __maintainer__ = "Vijini Mallawaarachchi"
 __email__ = "[email protected]"
-__status__ = "Alpha"
+__status__ = "Production/Stable"
 
 # create logger
 logger = logging.getLogger(f"GraphBin-Tk {__version__}")

diff --git a/src/gbintk/support/visualise_result_Flye.py b/src/gbintk/support/visualise_result_Flye.py
@@ -24,10 +24,10 @@
 __copyright__ = "Copyright 2023-2024, GraphBin-Tk Project"
 __credits__ = ["Vijini Mallawaarachchi", "Anuradha Wickramarachchi", "Yu Lin"]
 __license__ = "GPL-3.0"
-__version__ = "0.1.1"
+__version__ = "1.0.0"
 __maintainer__ = "Vijini Mallawaarachchi"
 __email__ = "[email protected]"
-__status__ = "Alpha"
+__status__ = "Production/Stable"
 
 
 # create logger

diff --git a/src/gbintk/support/visualise_result_MEGAHIT.py b/src/gbintk/support/visualise_result_MEGAHIT.py
@@ -25,10 +25,10 @@
 __copyright__ = "Copyright 2023-2024, GraphBin-Tk Project"
 __credits__ = ["Vijini Mallawaarachchi", "Anuradha Wickramarachchi", "Yu Lin"]
 __license__ = "GPL-3.0"
-__version__ = "0.1.1"
+__version__ = "1.0.0"
 __maintainer__ = "Vijini Mallawaarachchi"
 __email__ = "[email protected]"
-__status__ = "Alpha"
+__status__ = "Production/Stable"
 
 # create logger
 logger = logging.getLogger(f"GraphBin-Tk {__version__}")

diff --git a/src/gbintk/support/visualise_result_SPAdes.py b/src/gbintk/support/visualise_result_SPAdes.py
@@ -25,10 +25,10 @@
 __copyright__ = "Copyright 2023-2024, GraphBin-Tk Project"
 __credits__ = ["Vijini Mallawaarachchi", "Anuradha Wickramarachchi", "Yu Lin"]
 __license__ = "GPL-3.0"
-__version__ = "0.1.1"
+__version__ = "1.0.0"
 __maintainer__ = "Vijini Mallawaarachchi"
 __email__ = "[email protected]"
-__status__ = "Alpha"
+__status__ = "Production/Stable"
 
 
 # create logger