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add malaysia helminth study
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d-callan committed Mar 16, 2024
1 parent cf80df5 commit 2082553
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1 change: 1 addition & 0 deletions NAMESPACE
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Expand Up @@ -20,6 +20,7 @@ export(HMP_WGS)
export(Leishmaniasis)
export(MALED_2yr)
export(MALED_diarrhea)
export(Malaysia_helminth)
export(MbioDataset)
export(NICU_NEC)
export(SampleMetadata)
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31 changes: 30 additions & 1 deletion R/data.R
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Expand Up @@ -411,4 +411,33 @@
#' @source <https://microbiomedb.org/mbio/app/workspace/analyses/DS_2e56313a65/new/download>
#' @name MALED_diarrhea
#' @export
"MALED_diarrhea"
"MALED_diarrhea"

#' Malaysia helminth
#'
#' The Malaysia Helminth study profiled gut metagenomes of indigenous and
#' non-indigenous individuals originating from 5 villages
#' 407 adult and pediatric participants from 5 villages
#' (Bangkong, Tanjung Sepat, Rasau, Legong, and Judah), and Kuala Lumpur
#' 650 stool samples; 'shotgun' metagenomic sequencing.
#'
#' Website Release 32. (2023 May 30)
#'
#' @format ## `Malaysia_helminth`
#' A MbioDataset object with 28 metadata variables, 650 shotgun stool samples.
#' It contains the following collections: \cr
#' "WGS 4th level EC metagenome abundance data" \cr
#' "WGS Metagenome enzyme pathway abundance data" \cr
#' "WGS Metagenome enzyme pathway coverage data" \cr
#' "WGS Genus" \cr
#' "WGS Species" \cr
#' "WGS Family" \cr
#' "WGS Order" \cr
#' "WGS Phylum" \cr
#' "WGS Class" \cr
#' "WGS Kingdom" \cr
#' "WGS Normalized number of taxon-specific sequence matches" \cr
#' @source <https://microbiomedb.org/mbio/app/workspace/analyses/DS_abcf1b1d90/new/download>
#' @name Malaysia_helminth
#' @export
"Malaysia_helminth"
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41 changes: 41 additions & 0 deletions man/Malaysia_helminth.Rd

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